Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Kelly WP and Stumpf MP (2012) Assessing coverage of protein interaction data using capture-recapture models. Bull Math Biol 74(2):356-74 | Computational analysis , Omics |
| Kelly WP, et al. (2012) The degree distribution of networks: statistical model selection. Methods Mol Biol 804():245-62 | Computational analysis , Omics |
| Kelstrup CD, et al. (2012) Optimized Fast and Sensitive Acquisition Methods for Shotgun Proteomics on a Quadrupole Orbitrap Mass Spectrometer. J Proteome Res () | Large-scale protein detection , Omics |
| Khmelinskii A, et al. (2012) Tandem fluorescent protein timers for in vivo analysis of protein dynamics.LID - 10.1038/nbt.2281 [doi] Nat Biotechnol () | Large-scale phenotype analysis , Omics |
| Kiktev DA, et al. (2012) Regulation of chaperone effects on a yeast prion by cochaperone Sgt2. Mol Cell Biol 32(24):4960-70 | Large-scale phenotype analysis , Omics |
| Kim D, et al. (2012) The core regulation module of stress-responsive regulatory networks in yeast. Nucleic Acids Res 40(18):8793-802 | Computational analysis , Omics |
| Kim Guisbert KS, et al. (2012) Meiosis-induced alterations in transcript architecture and noncoding RNA expression in S. cerevisiae. RNA 18(6):1142-53 | Genomic expression study , Omics |
| Kim H, et al. (2012) Vacuolar H+-ATPase (V-ATPase) promotes vacuolar membrane permeabilization and nonapoptotic death in stressed yeast. J Biol Chem 287(23):19029-39 | Large-scale phenotype analysis , Omics |
| Kim J, et al. (2012) Network rewiring is an important mechanism of gene essentiality change. Sci Rep 2():900 | Omics |
| Kim KH and Sauro HM (2012) Adjusting phenotypes by noise control. PLoS Comput Biol 8(1):e1002344 | Computational analysis , Omics |
| Kim T, et al. (2012) Set3 HDAC mediates effects of overlapping noncoding transcription on gene induction kinetics. Cell 150(6):1158-69 | Genomic expression study , Omics |
| Kirik U, et al. (2012) Multimodel pathway enrichment methods for functional evaluation of expression regulation. J Proteome Res 11(5):2955-67 | Computational analysis , Omics |
| Kirk P, et al. (2012) Bayesian correlated clustering to integrate multiple datasets. Bioinformatics 28(24):3290-7 | Computational analysis , Omics |
| Kitanovic A, et al. (2012) Acetic acid treatment in S. cerevisiae creates significant energy deficiency and nutrient starvation that is dependent on the activity of the mitochondrial transcriptional complex Hap2-3-4-5. Front Oncol 2():118 | Computational analysis , Omics |
| Klann M, et al. (2012) Spatial modeling of vesicle transport and the cytoskeleton: the challenge of hitting the right road. PLoS One 7(1):e29645 | Computational analysis , Omics |
| Klarner H, et al. (2012) Time series dependent analysis of unparametrized Thomas networks. IEEE/ACM Trans Comput Biol Bioinform 9(5):1338-51 | Computational analysis , Omics |
| Knott SR, et al. (2012) Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae. Cell 148(1-2):99-111 | Omics , Other genomic analysis |
| Kopp A and McIntyre LM (2012) Transcriptional network structure has little effect on the rate of regulatory evolution in yeast. Mol Biol Evol 29(8):1899-905 | Computational analysis , Omics |
| Korolev KS, et al. (2012) Selective sweeps in growing microbial colonies. Phys Biol 9(2):026008 | Computational analysis , Omics |
| Kotiadis VN, et al. (2012) Identification of new surfaces of cofilin that link mitochondrial function to the control of multi-drug resistance. J Cell Sci 125(Pt 9):2288-99 | Genomic expression study , Omics |
| Krassovsky K, et al. (2012) Tripartite organization of centromeric chromatin in budding yeast. Proc Natl Acad Sci U S A 109(1):243-8 | Computational analysis , Genomic co-immunoprecipitation study , Omics |
| Krause SA, et al. (2012) Functional specialisation of yeast Rho1 GTP exchange factors. J Cell Sci 125(Pt 11):2721-31 | Large-scale genetic interaction , Omics |
| Ku WL, et al. (2012) Interpreting patterns of gene expression: signatures of coregulation, the data processing inequality, and triplet motifs. PLoS One 7(2):e31969 | Computational analysis , Omics |
| Kung LF, et al. (2012) Sec24p and Sec16p cooperate to regulate the GTP cycle of the COPII coat. EMBO J 31(4):1014-27 | Omics |
| Kunicka-Styczynska A and Rajkowska K (2012) Phenotypic and genotypic diversity of wine yeasts used for acidic musts. World J Microbiol Biotechnol 28(5):1929-1940 | Omics , Other genomic analysis |
| Kvas S, et al. (2012) Loss of nonsense mediated decay suppresses mutations in Saccharomyces cerevisiae TRA1. BMC Genet 13(1):19 | Omics , Other genomic analysis |
| Lai AC, et al. (2012) Predicting kinase substrates using conservation of local motif density. Bioinformatics 28(7):962-9 | Computational analysis , Omics |
| Lanza AM, et al. (2012) Linking yeast Gcn5p catalytic function and gene regulation using a quantitative, graded dominant mutant approach. PLoS One 7(4):e36193 | Genomic expression study , Omics |
| Lavigne R, et al. (2012) Direct iterative protein profiling (DIPP) - an innovative method for large-scale protein detection applied to budding yeast mitosis. Mol Cell Proteomics 11(2):M111.012682 | Large-scale protein detection , Omics |
| Le NT, et al. (2012) Computational Reconstruction of Transcriptional Relationship from ChIP-Chip Data. IEEE/ACM Trans Comput Biol Bioinform () | Computational analysis , Omics |
