Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Gallien S, et al. (2012) Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer. Mol Cell Proteomics 11(12):1709-23 | Large-scale protein detection , Omics |
| Gamberi T, et al. (2012) Evaluation of SCO1 deletion on Saccharomyces cerevisiae metabolism through a proteomic approach. Proteomics 12(11):1767-80 | Large-scale protein detection , Omics |
| Gan Y, et al. (2012) Structural features based genome-wide characterization and prediction of nucleosome organization. BMC Bioinformatics 13(1):49 | Computational analysis , Omics |
| Gao YF, et al. (2012) Predicting metabolic pathways of small molecules and enzymes based on interaction information of chemicals and proteins. PLoS One 7(9):e45944 | Computational analysis , Omics |
| Garcia Sanchez CE, et al. (2012) Predictive Potential of Flux Balance Analysis of Saccharomyces cerevisiae Using as Optimization Function Combinations of Cell Compartmental Objectives. PLoS One 7(8):e43006 | Computational analysis , Omics |
| Garcia-Martinez J, et al. (2012) The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast. Transcription 3(1):39-44 | Computational analysis , Omics , Other genomic analysis |
| Garcia-Rubio ML and Aguilera A (2012) Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes. Nucleic Acids Res 40(3):1050-64 | Genomic co-immunoprecipitation study , Omics |
| Geeven G, et al. (2012) Comparison of targeted maximum likelihood and shrinkage estimators of parameters in gene networks.LID - 10.1515/1544-6115.1728 [doi]LID - /j/sagmb.2012.11.issue-5/1544-6115.1728/1544-6115.1728.xml [pii] Stat Appl Genet Mol Biol 11(5) | Computational analysis , Omics |
| Geeven G, et al. (2012) Identification of context-specific gene regulatory networks with GEMULA--gene expression modeling using LAsso. Bioinformatics 28(2):214-21 | Computational analysis , Omics |
| Geijer C, et al. (2012) Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response. BMC Genomics 13(1):554 | Computational analysis , Genomic expression study , Omics |
| Gelis S, et al. (2012) Adaptation to potassium starvation of wild-type and K(+)-transport mutant (trk1,2) of Saccharomyces cerevisiae: 2-dimensional gel electrophoresis-based proteomic approach. Microbiologyopen 1(2):182-93 | Large-scale protein detection , Omics |
| Geng J, et al. (2012) On enhancing productivity of bioethanol with multiple species. Biotechnol Bioeng 109(6):1508-17 | Computational analysis , Omics |
| Gerashchenko MV, et al. (2012) Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress. Proc Natl Acad Sci U S A 109(43):17394-9 | Genomic expression study , Omics |
| Giardina BJ, et al. (2012) Comparative Proteomic Analysis of Transition of Saccharomyces cerevisiae from Glucose-Deficient Medium to Glucose-Rich Medium. Proteome Sci 10(1):40 | Large-scale protein detection , Omics |
| Gidvani RD, et al. (2012) A quantitative model of the initiation of DNA replication in Saccharomyces cerevisiae predicts the effects of system perturbations. BMC Syst Biol 6(1):78 | Computational analysis , Omics |
| Gillet LC, et al. (2012) Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis. Mol Cell Proteomics 11(6):O111.016717 | Large-scale protein detection , Omics |
| Gilmore JM, et al. (2012) Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses. Mol Cell Proteomics 11(4):M111.011544 | Genomic expression study , Omics |
| Gingold H, et al. (2012) Dynamic changes in translational efficiency are deduced from codon usage of the transcriptome. Nucleic Acids Res 40(20):10053-63 | Omics |
| Gkoutos GV and Hoehndorf R (2012) Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes. J Biomed Semantics 3 Suppl 2():S6 | Computational analysis , Omics |
| Glass K, et al. (2012) Implications of functional similarity for gene regulatory interactions. J R Soc Interface 9(72):1625-36 | Computational analysis , Omics |
| Gomez-Herreros F, et al. (2012) TFIIS is required for the balanced expression of the genes encoding ribosomal components under transcriptional stress. Nucleic Acids Res 40(14):6508-19 | Genomic co-immunoprecipitation study , Omics |
| Gomez-Pastor R, et al. (2012) Modification of the TRX2 gene dose in Saccharomyces cerevisiae affects hexokinase 2 gene regulation during wine yeast biomass production. Appl Microbiol Biotechnol 94(3):773-87 | Genomic expression study , Omics |
| Goncalves JP, et al. (2012) Regulatory Snapshots: integrative mining of regulatory modules from expression time series and regulatory networks. PLoS One 7(5):e35977 | Computational analysis , Omics |
| Gonzalez M, et al. (2012) High abundance of Serine/Threonine-rich regions predicted to be hyper-O-glycosylated in the secretory proteins coded by eight fungal genomes. BMC Microbiol 12(1):213 | Computational analysis , Omics |
| Gosline SJ, et al. (2012) SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets. Integr Biol (Camb) 4(11):1415-27 | Computational analysis , Omics |
| Gossett AJ and Lieb JD (2012) In Vivo Effects of Histone H3 Depletion on Nucleosome Occupancy and Position in Saccharomyces cerevisiae. PLoS Genet 8(6):e1002771 | Omics , Other genomic analysis |
| Griesemer M, et al. (2012) Spatial localisation of chaperone distribution in the endoplasmic reticulum of yeast. IET Syst Biol 6(2):54-63 | Computational analysis , Omics |
| Grigat M, et al. (2012) Multiple histone deacetylases are recruited by corepressor Sin3 and contribute to gene repression mediated by Opi1 regulator of phospholipid biosynthesis in the yeast Saccharomyces cerevisiae. Mol Genet Genomics 287(6):461-72 | Genomic co-immunoprecipitation study , Omics |
| Grun B, et al. (2012) Modelling time course gene expression data with finite mixtures of linear additive models. Bioinformatics 28(2):222-8 | Computational analysis , Omics |
| Grzegorczyk M and Husmeier D (2012) A non-homogeneous dynamic bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology.LID - 10.1515/1544-6115.1761 [doi]LID - /j/sagmb.2012.11.issue-4/1544-6115.1761/1544-6115.1761.xml [pii] Stat Appl Genet Mol Biol 11(4) | Computational analysis , Omics |
