Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Kahali B, et al. (2009) Exploring the evolutionary rate differences of party hub and date hub proteins in Saccharomyces cerevisiae protein-protein interaction network. Gene 429(1-2):18-22 | Large-scale protein interaction |
| Kalocsay M, et al. (2009) Chromosome-wide Rad51 spreading and SUMO-H2A.Z-dependent chromosome fixation in response to a persistent DNA double-strand break. Mol Cell 33(3):335-43 | Genomic co-immunoprecipitation study |
| Kanaan SP, et al. (2009) Inferring protein-protein interactions from multiple protein domain combinations. Methods Mol Biol 541:1-17 | Computational analysis |
| Kanki T, et al. (2009) A genomic screen for yeast mutants defective in selective mitochondria autophagy. Mol Biol Cell 20(22):4730-8 | Large-scale phenotype analysis |
| Kanki T, et al. (2009) Atg32 is a mitochondrial protein that confers selectivity during mitophagy. Dev Cell 17(1):98-109 | Large-scale phenotype analysis |
| Kaplan N, et al. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458(7236):362-6 | Computational analysis , Other genomic analysis |
| Kar S, et al. (2009) Exploring the roles of noise in the eukaryotic cell cycle. Proc Natl Acad Sci U S A 106(16):6471-6 | Computational analysis |
| Karhumaa K, et al. (2009) Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400. Yeast 26(7):371-82 | Large-scale protein detection |
| Kashima H, et al. (2009) Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach. Bioinformatics 25(22):2962-8 | Computational analysis |
| Kavanaugh LA and Dietrich FS (2009) Non-Coding RNA Prediction and Verification in Saccharomyces cerevisiae. PLoS Genet 5(1):e1000321 | Computational analysis |
| Kawai S, et al. (2009) Transcriptional and metabolic response in yeast Saccharomyces cerevisiae cells during polyethylene glycol-dependent transformation. J Basic Microbiol 49(1):73-81 | Genomic expression study |
| Keller PJ and Knop M (2009) Evolution of mutational robustness in the yeast genome: a link to essential genes and meiotic recombination hotspots. PLoS Genet 5(6):e1000533 | Computational analysis |
| Kelley R and Ideker T (2009) Genome-wide fitness and expression profiling implicate Mga2 in adaptation to hydrogen peroxide. PLoS Genet 5(5):e1000488 | Genomic expression study , Large-scale phenotype analysis |
| Kelly L, et al. (2009) A survey of integral alpha-helical membrane proteins. J Struct Funct Genomics 10(4):269-80 | Computational analysis |
| Kemmer D, et al. (2009) Combining chemical genomics screens in yeast to reveal spectrum of effects of chemical inhibition of sphingolipid biosynthesis. BMC Microbiol 9:9 | Large-scale genetic interaction , Large-scale phenotype analysis |
| Kershaw CJ, et al. (2009) Mutations in the U5 snRNA result in altered splicing of subsets of pre-mRNAs and reduced stability of Prp8. RNA 15(7):1292-304 | Large-scale phenotype analysis , Other genomic analysis |
| Khozoie C, et al. (2009) The Antimalarial Drug Quinine Disrupts Tat2p-mediated Tryptophan Transport and Causes Tryptophan Starvation. J Biol Chem 284(27):17968-74 | Large-scale phenotype analysis |
| Kienle N, et al. (2009) Phylogeny of the SNARE vesicle fusion machinery yields insights into the conservation of the secretory pathway in fungi. BMC Evol Biol 9:19 | Computational analysis |
| Kim H and Gelenbe E (2009) Anomaly detection in gene expression via stochastic models of gene regulatory networks. BMC Genomics 10 Suppl 3():S26 | Computational analysis |
| Kim HS and Fay JC (2009) A Combined-Cross Analysis Reveals Genes With Drug-Specific and Background-Dependent Effects on Drug Sensitivity in Saccharomyces cerevisiae. Genetics 183(3):1141-51 | Other genomic analysis |
| Kim HS, et al. (2009) Dissecting the pleiotropic consequences of a quantitative trait nucleotide. FEMS Yeast Res 9(5):713-22 | Genomic expression study |
| Kim JH, et al. (2009) The unfolded protein response is necessary but not sufficient to compensate for defects in disulfide isomerization. J Biol Chem 284(16):10400-8 | Large-scale genetic interaction |
| Kim Y, et al. (2009) The Enrichment of TATA Box and the Scarcity of Depleted Proximal Nucleosome in the Promoters of Duplicated Yeast Genes. J Mol Evol () | Other genomic analysis |
| King RD, et al. (2009) The automation of science. Science 324(5923):85-9 | Computational analysis |
| Kirmizis A, et al. (2009) Distinct transcriptional outputs associated with mono- and dimethylated histone H3 arginine 2. Nat Struct Mol Biol 16(4):449-51 | Genomic co-immunoprecipitation study |
| Kitagaki H, et al. (2009) ISC1-dependent Metabolic Adaptation Reveals an Indispensable Role for Mitochondria in Induction of Nuclear Genes during the Diauxic Shift in Saccharomyces cerevisiae. J Biol Chem 284(16):10818-30 | Genomic expression study |
| Kleiger G, et al. (2009) The Acidic Tail of the Cdc34 Ubiquitin-conjugating Enzyme Functions in Both Binding to and Catalysis with Ubiquitin Ligase SCFCdc4. J Biol Chem 284(52):36012-23 | Other large-scale proteomic analysis |
| Kleiman M and Tannenbaum E (2009) Diploidy and the selective advantage for sexual reproduction in unicellular organisms. Theory Biosci 128(4):249-85 | Computational analysis |
| Klipp E (2009) Timing matters. FEBS Lett 583(24):4013-8 | Computational analysis |
| Klopf E, et al. (2009) Cooperation between the INO80 complex and histone chaperones determines adaptation of stress gene transcription in the yeast Saccharomyces cerevisiae. Mol Cell Biol 29(18):4994-5007 | Genomic expression study |
