Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Dunn B, et al. (2012) Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Res 22(5):908-24 | Comparative genomic hybridization , Omics |
| Durand-Dubief M, et al. (2012) SWI/SNF-Like Chromatin Remodeling Factor Fun30 Supports Point Centromere Function in S. cerevisiae. PLoS Genet 8(9):e1002974 | Genomic co-immunoprecipitation study , Genomic expression study , Omics |
| Dymond J and Boeke J (2012) The Saccharomyces cerevisiae SCRaMbLE system and genome minimization. Bioeng Bugs 3(3):168-71 | Omics , Other genomic analysis |
| Egen D and Lun DS (2012) Truncated branch and bound achieves efficient constraint-based genetic design. Bioinformatics 28(12):1619-23 | Computational analysis , Omics |
| Ehrenreich IM, et al. (2012) Genetic Architecture of Highly Complex Chemical Resistance Traits across Four Yeast Strains. PLoS Genet 8(3):e1002570 | Large-scale phenotype analysis , Omics , Other genomic analysis |
| Feiglin A, et al. (2012) Neighbor overlap is enriched in the yeast interaction network: analysis and implications. PLoS One 7(6):e39662 | Computational analysis , Omics |
| Fernandez MA, et al. (2012) Identification of a core set of signature cell cycle genes whose relative order of time to peak expression is conserved across species. Nucleic Acids Res 40(7):2823-32 | Computational analysis , Omics |
| Ferreira RT, et al. (2012) Arsenic stress elicits cytosolic Ca(2+) bursts and Crz1 activation in Saccharomyces cerevisiae. Microbiology 158(Pt 9):2293-302 | Genomic expression study , Omics |
| Fierst JL and Phillips PC (2012) Variance in epistasis links gene regulation and evolutionary rate in the yeast genetic interaction network. Genome Biol Evol 4(11):1080-7 | Computational analysis , Omics |
| Fiori A and Van Dijck P (2012) Potent synergistic effect of doxycycline with fluconazole against Candida albicans is mediated by interference with iron homeostasis. Antimicrob Agents Chemother 56(7):3785-96 | Large-scale phenotype analysis , Omics |
| Flom GA, et al. (2012) Identification of an Hsp90 mutation that selectively disrupts cAMP/PKA signaling in Saccharomyces cerevisiae. Curr Genet 58(3):149-63 | Genomic expression study , Omics |
| Fokkens L, et al. (2012) Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age. BMC Evol Biol 12(1):99 | Computational analysis , Omics |
| Fomenko DE and Gladyshev VN (2012) Comparative genomics of thiol oxidoreductases reveals widespread and essential functions of thiol-based redox control of cellular processes. Antioxid Redox Signal 16(3):193-201 | Omics , Other large-scale proteomic analysis |
| Fournier CT, et al. (2012) Amino termini of many yeast proteins map to downstream start codons. J Proteome Res 11(12):5712-9 | Omics |
| Francis MR and Fertig EJ (2012) Quantifying the dynamics of coupled networks of switches and oscillators. PLoS One 7(1):e29497 | Computational analysis , Omics |
| Franzosa EA and Xia Y (2012) Independent effects of protein core size and expression on residue-level structure-evolution relationships. PLoS One 7(10):e46602 | Computational analysis , Omics |
| Fraser H, et al. (2012) Polygenic cis-regulatory adaptation in the evolution of yeast pathogenicity. Genome Res 22(10):1930-9 | Computational analysis , Large-scale phenotype analysis , Omics |
| Freire P, et al. (2012) Interplay of transcriptional and proteolytic regulation in driving robust cell cycle progression. Mol Biosyst 8(3):863-70 | Computational analysis , Omics |
| Frenkel-Morgenstern M, et al. (2012) Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels. Mol Syst Biol 8():572 | Computational analysis , Omics |
| Friederichs JM, et al. (2012) Genetic Analysis of Mps3 SUN Domain Mutants in Saccharomyces cerevisiae Reveals an Interaction with the SUN-Like Protein Slp1. G3 (Bethesda) 2(12):1703-18 | Omics |
| Frigola D, et al. (2012) Asymmetric stochastic switching driven by intrinsic molecular noise. PLoS One 7(2):e31407 | Computational analysis , Omics |
| Frost A, et al. (2012) Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions. Cell 149(6):1339-52 | Large-scale genetic interaction , Omics , Other genomic analysis |
| Fuchs SM, et al. (2012) RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36. J Biol Chem 287(5):3249-56 | Large-scale genetic interaction , Omics |
| Gallien S, et al. (2012) Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer. Mol Cell Proteomics 11(12):1709-23 | Large-scale protein detection , Omics |
| Gamberi T, et al. (2012) Evaluation of SCO1 deletion on Saccharomyces cerevisiae metabolism through a proteomic approach. Proteomics 12(11):1767-80 | Large-scale protein detection , Omics |
| Gan Y, et al. (2012) Structural features based genome-wide characterization and prediction of nucleosome organization. BMC Bioinformatics 13(1):49 | Computational analysis , Omics |
| Gao YF, et al. (2012) Predicting metabolic pathways of small molecules and enzymes based on interaction information of chemicals and proteins. PLoS One 7(9):e45944 | Computational analysis , Omics |
| Garcia Sanchez CE, et al. (2012) Predictive Potential of Flux Balance Analysis of Saccharomyces cerevisiae Using as Optimization Function Combinations of Cell Compartmental Objectives. PLoS One 7(8):e43006 | Computational analysis , Omics |
| Garcia-Martinez J, et al. (2012) The relative importance of transcription rate, cryptic transcription and mRNA stability on shaping stress responses in yeast. Transcription 3(1):39-44 | Computational analysis , Omics , Other genomic analysis |
| Garcia-Rubio ML and Aguilera A (2012) Topological constraints impair RNA polymerase II transcription and causes instability of plasmid-borne convergent genes. Nucleic Acids Res 40(3):1050-64 | Genomic co-immunoprecipitation study , Omics |
