Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Huang H and Bader JS (2009) Precision and recall estimates for two-hybrid screens. Bioinformatics 25(3):372-8 | Computational analysis |
| Huang KY, et al. (2009) Micropreparative fractionation of the complexome by blue native continuous elution electrophoresis. Proteomics 9(9):2494-502 | Large-scale protein detection |
| Huang SS and Fraenkel E (2009) Integrating proteomic, transcriptional, and interactome data reveals hidden components of signaling and regulatory networks. Sci Signal 2(81):ra40 | Computational analysis |
| Huang Y, et al. (2009) Selection for minimization of translational frameshifting errors as a factor in the evolution of codon usage. Nucleic Acids Res 37(20):6799-810 | Computational analysis |
| Huber A, et al. (2009) Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. Genes Dev 23(16):1929-43 | Large-scale protein modification |
| Huh S, et al. (2009) Efficient framework for automated classification of subcellular patterns in budding yeast. Cytometry A 75(11):934-40 | Computational analysis |
| Huttenhower C, et al. (2009) Computational analysis of the yeast proteome: understanding and exploiting functional specificity in genomic data. Methods Mol Biol 548:273-93 | Computational analysis |
| Huttenhower C, et al. (2009) Detailing regulatory networks through large scale data integration. Bioinformatics 25(24):3267-74 | Computational analysis |
| Huttenhower C, et al. (2009) The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction. Bioinformatics 25(18):2404-10 | Computational analysis , Large-scale phenotype analysis |
| Hwang YC, et al. (2009) Predicting essential genes based on network and sequence analysis. Mol Biosyst | Computational analysis |
| Hyrien O and Goldar A (2009) Mathematical modelling of eukaryotic DNA replication. Chromosome Res () | Computational analysis |
| Ikui AE and Cross FR (2009) Specific genetic interactions between spindle assembly checkpoint proteins and B-Type cyclins in Saccharomyces cerevisiae. Genetics 183(1):51-61 | Large-scale genetic interaction |
| Irons DJ (2009) Logical analysis of the budding yeast cell cycle. J Theor Biol 257(4):543-59 | Computational analysis |
| Ivanic J, et al. (2009) Influence of protein abundance on high-throughput protein-protein interaction detection. PLoS ONE 4(6):e5815 | Computational analysis |
| James SA, et al. (2009) Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res 19(4):626-35 | Other genomic analysis |
| Jansen G, et al. (2009) Chemogenomic profiling predicts antifungal synergies. Mol Syst Biol 5():338 | Computational analysis , Large-scale phenotype analysis |
| Jiang C and Pugh BF (2009) A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome. Genome Biol 10(10):R109 | Computational analysis , Genomic co-immunoprecipitation study |
| Jin H, et al. (2009) Pds5 is required for homologue pairing and inhibits synapsis of sister chromatids during yeast meiosis. J Cell Biol 186(5):713-25 | Genomic co-immunoprecipitation study |
| Jin R, et al. (2009) Identifying dynamic network modules with temporal and spatial constraints. Pac Symp Biocomput203-14 | Computational analysis |
| Jin Y, et al. (2009) Genetic and Genomewide Analysis of Simultaneous Mutations in Acetylated and Methylated Lysine Residues in Histone H3 in Saccharomyces cerevisiae. Genetics 181(2):461-72 | Genomic expression study |
| Jo S, et al. (2009) CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranes. Biophys J 97(1):50-8 | Computational analysis |
| Jo WJ, et al. (2009) Comparative functional genomic analysis identifies distinct and overlapping sets of genes required for resistance to monomethylarsonous acid (MMAIII) and arsenite (AsIII) in yeast. Toxicol Sci 111(2):424-36 | Large-scale phenotype analysis |
| Jo WJ, et al. (2009) Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae. BMC Genomics 10:130 | Genomic expression study , Large-scale phenotype analysis , Other genomic analysis |
| Jonikas MC, et al. (2009) Comprehensive characterization of genes required for protein folding in the endoplasmic reticulum. Science 323(5922):1693-7 | Large-scale genetic interaction , Large-scale phenotype analysis |
| Joo YJ, et al. (2009) Determination of the core promoter regions of the Saccharomyces cerevisiae RPS3 gene. Biochim Biophys Acta 1789(11-12):741-50 | Large-scale protein interaction |
| Joseph JM and Durand D (2009) Family classification without domain chaining. Bioinformatics 25(12):i45-53 | Computational analysis |
| Joshi A, et al. (2009) Module networks revisited: computational assessment and prioritization of model predictions. Bioinformatics 25(4):490-6 | Computational analysis |
| Jothi R, et al. (2009) Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture. Mol Syst Biol 5:294 | Computational analysis |
| Jupiter D, et al. (2009) STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. BMC Bioinformatics 10:332 | Computational analysis |
| Kafasla P, et al. (2009) Interaction of yeast eIF4G with spliceosome components: Implications in pre-mRNA processing events. RNA Biol 6(5):563-74 | Genomic expression study |
