Genome-wide Analysis papers 
Click on a topic to see a list of all papers associated with that topic:
| Citation | Topic(s) |
|---|---|
| Anton-Leberre V, et al. (2010) Exposure to high static or pulsed magnetic fields does not affect cellular processes in the yeast Saccharomyces cerevisiae. Bioelectromagnetics 31(1):28-38 | Genomic expression study , Large-scale protein detection |
| Boghigian BA, et al. (2010) Computational analysis of phenotypic space in heterologous polyketide biosynthesis--applications to Escherichia coli, Bacillus subtilis, and Saccharomyces cerevisiae. J Theor Biol 262(2):197-207 | Computational analysis |
| Brehelin L, et al. (2010) Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum. BMC Genomics 11(1):35 | Computational analysis |
| Celton M, et al. (2010) Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments. BMC Genomics 11(1):15 | Computational analysis |
| Checkley MA, et al. (2010) P-body components are required for Ty1 retrotransposition during assembly of retrotransposition-competent virus-like particles. Mol Cell Biol 30(2):382-98 | Large-scale phenotype analysis |
| Cheli VT and Dell' Angelica EC (2010) Early Origin of Genes Encoding Subunits of Biogenesis of Lysosome-related Organelles Complex (BLOC)-1, -2 and -3. Traffic () | Computational analysis |
| Cho YR and Zhang A (2010) Predicting protein function by frequent functional association pattern mining in protein interaction networks. IEEE Trans Inf Technol Biomed 14(1):30-6 | Computational analysis |
| Costanzo M, et al. (2010) The genetic landscape of a cell. Science 327(5964):425-31 | Large-scale genetic interaction |
| Despons L, et al. (2010) Genome-wide computational prediction of tandem gene arrays: application in yeasts. BMC Genomics 11(1):56 | Computational analysis , Other genomic analysis |
| Dvorakova-Hola K, et al. (2010) Glycine-rich loop of mitochondrial processing peptidase alpha-subunit is responsible for substrate recognition by a mechanism analogous to mitochondrial receptor Tom20. J Mol Biol () | Computational analysis |
| Ehrentraut S, et al. (2010) Rpd3-dependent boundary formation at telomeres by removal of Sir2 substrate. Proc Natl Acad Sci U S A () | Genomic co-immunoprecipitation study |
| Ekman D and Elofsson A (2010) Identifying and quantifying orphan protein sequences in fungi. J Mol Biol 396(2):396-405 | Computational analysis |
| Eliyahu E, et al. (2010) Tom20 Mediates Localization of mRNAs to Mitochondria in a Translation-Dependent Manner. Mol Cell Biol 30(1):284-94 | Genomic expression study |
| Eng KH, et al. (2010) Transient genotype-by-environment interactions following environmental shock provide a source of expression variation for essential genes. Genetics 184(2):587-93 | Genomic expression study |
| Estrada E (2010) Generalized walks-based centrality measures for complex biological networks. J Theor Biol () | Computational analysis |
| Feng J, et al. (2010) New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome. BMC Genomics 11(1):33 | Computational analysis |
| Fournier ML, et al. (2010) Delayed Correlation of mRNA and Protein Expression in Rapamycin-treated Cells and a Role for Ggc1 in Cellular Sensitivity to Rapamycin. Mol Cell Proteomics 9(2):271-84 | Genomic expression study , Large-scale protein detection |
| Fraser HB and Schadt EE (2010) The quantitative genetics of phenotypic robustness. PLoS One 5(1):e8635 | Computational analysis |
| Gat-Viks I, et al. (2010) Understanding gene sequence variation in the context of transcription regulation in yeast. PLoS Genet 6(1):e1000800 | Computational analysis |
| Gavranovic H and Tannier E (2010) Guided genome halving: provably optimal solutions provide good insights into the preduplication ancestral genome of Saccharomyces cerevisiae. Pac Symp Biocomput ():21-30 | Computational analysis |
| Gertz J, et al. (2010) Epistasis in a quantitative trait captured by a molecular model of transcription factor interactions. Theor Popul Biol 77(1):1-5 | Computational analysis |
| Good DM, et al. (2010) The effect of interfering ions on search algorithm performance for electron-transfer dissociation data. Proteomics 10(1):164-7 | Computational analysis |
| Hansen L, et al. (2010) Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome. Nucleic Acids Res () | Other genomic analysis |
| Hansen M, et al. (2010) Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction. Algorithms Mol Biol 5(1):4 | Computational analysis |
| Hazelwood LA, et al. (2010) Involvement of Vacuolar Sequestration and Active Transport in Tolerance of Saccharomyces cerevisiae to Hop Iso-{alpha}-Acids. Appl Environ Microbiol 76(1):318-28 | Genomic expression study , Large-scale phenotype analysis |
| He X, et al. (2010) Prevalent positive epistasis in Escherichia coli and Saccharomyces cerevisiae metabolic networks. Nat Genet () | Computational analysis |
| Heise B, et al. (2010) The TEA transcription factor Tec1 confers promoter-specific gene regulation by mechanisms dependent and independent of Ste12. Eukaryot Cell () | Genomic expression study |
| Helbig AO, et al. (2010) Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome. Mol Cell Proteomics () | Other large-scale proteomic analysis |
| Hong D and Man S (2010) Signal propagation in small-world biological networks with weak noise. J Theor Biol 262(2):370-80 | Computational analysis |
| Indurkhya S and Beal J (2010) Reaction factoring and bipartite update graphs accelerate the Gillespie Algorithm for large-scale biochemical systems. PLoS One 5(1):e8125 | Computational analysis |
