| Levy ED (2010) A simple definition of structural regions in proteins and its use in analyzing interface evolution. J Mol Biol 403(4):660-70
|
| Ma L, et al. (2010) Proteins deleterious on overexpression are associated with high intrinsic disorder, specific interaction domains, and low abundance. J Proteome Res 9(3):1218-25
|
| Paulovich AG, et al. (2010) Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance. Mol Cell Proteomics 9(2):242-54
|
| Picotti P, et al. (2010) High-throughput generation of selected reaction-monitoring assays for proteins and proteomes. Nat Methods 7(1):43-6
|
| Scherrer T, et al. (2010) A Screen for RNA-Binding Proteins in Yeast Indicates Dual Functions for Many Enzymes. PLoS One 5(11):e15499
|
| Yang JR, et al. (2010) Impact of translational error-induced and error-free misfolding on the rate of protein evolution. Mol Syst Biol 6():421
|
| Baudouin-Cornu P, et al. (2009) Development of a new method for absolute protein quantification on 2-D gels. Proteomics 9(20):4606-15
|
| Fornes O, et al. (2009) ModLink+: improving fold recognition by using protein-protein interactions. Bioinformatics 25(12):1506-1512
|
| Freckleton G, et al. (2009) Microarray profiling of phage-display selections for rapid mapping of transcription factor-DNA interactions. PLoS Genet 5(4):e1000449
|
| Hays FA, et al. (2009) Ratiocinative screen of eukaryotic integral membrane protein expression and solubilization for structure determination. J Struct Funct Genomics 10(1):9-16
|
| He X and Zhang J (2009) On the growth of scientific knowledge: yeast biology as a case study. PLoS Comput Biol 5(3):e1000320
|
| Ho CK, et al. (2009) Identification of nucleases and phosphatases by direct biochemical screen of the Saccharomyces cerevisiae proteome. PLoS One 4(9):e6993
|
| Kleiger G, et al. (2009) The Acidic Tail of the Cdc34 Ubiquitin-conjugating Enzyme Functions in Both Binding to and Catalysis with Ubiquitin Ligase SCFCdc4. J Biol Chem 284(52):36012-23
|
| Li M, et al. (2009) Selecting optimum eukaryotic integral membrane proteins for structure determination by rapid expression and solubilization screening. J Mol Biol 385(3):820-30
|
| Li N, et al. (2009) Low contents of carbon and nitrogen in highly abundant proteins: evidence of selection for the economy of atomic composition. J Mol Evol 68(3):248-55
|
| Okada S, et al. (2009) Circular permutation of ligand-binding module improves dynamic range of genetically encoded FRET-based nanosensor. Protein Sci 18(12):2518-27
|
| Sadygov RG, et al. (2009) A New Probabilistic Database Search Algorithm for ETD Spectra. J Proteome Res 8(6):3198-3205
|
| Vogtle FN, et al. (2009) Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability. Cell 139(2):428-39
|
| Volchenboum SL, et al. (2009) Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns. Mol Cell Proteomics 8(8):2011-22
|
| Wernimont A and Edwards A (2009) In situ proteolysis to generate crystals for structure determination: an update. PLoS ONE 4(4):e5094
|
| Gsponer J, et al. (2008) Tight regulation of unstructured proteins: from transcript synthesis to protein degradation. Science 322(5906):1365-8
|
| Huthmacher C, et al. (2008) A computational analysis of protein interactions in metabolic networks reveals novel enzyme pairs potentially involved in metabolic channeling. J Theor Biol 252(3):456-64
|
| Manderson EN, et al. (2008) A Novel Genetic Screen Implicates Elm1 in the Inactivation of the Yeast Transcription Factor SBF. PLoS ONE 3(1):e1500
|
| Tanaka Y, et al. (2008) Development of a capillary electrophoresis-mass spectrometry method using polymer capillaries for metabolomic analysis of yeast. Electrophoresis 29(10):2016-23
|
| Tompa P, et al. (2008) Structural disorder serves as a weak signal for intracellular protein degradation. Proteins 71(2):903-9
|
| Bakalarski CE, et al. (2007) The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics. Anal Bioanal Chem 389(5):1409-19
|
| Bisson LF, et al. (2007) Functional Genomics of Wine Yeast Saccharomyces cerevisiae. Adv Food Nutr Res 53:65-121
|
| Brown KR and Jurisica I (2007) Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biol 8(5):R95
|
| Foss EJ, et al. (2007) Genetic basis of proteome variation in yeast. Nat Genet 39(11):1369-75
|
| Kall L, et al. (2007) Semi-supervised learning for peptide identification from shotgun proteomics datasets. Nat Methods 4(11):923-5
|
