| O'Sullivan JM, et al. (2009) Repeated elements coordinate the spatial organization of the yeast genome. Yeast 26(2):125-38
|
| Parkhomchuk D, et al. (2009) Transcriptome analysis by strand-specific sequencing of complementary DNA. Nucleic Acids Res 37(18):e123
|
| Petranovic D and Nielsen J (2009) Can yeast systems biology contribute to the understanding of human disease? Trends Biotechnol 26(11):584-90
|
| Qi J, et al. (2009) Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae. BMC Genomics 10():475
|
| Richards KD, et al. (2009) A database of microsatellite genotypes for Saccharomyces cerevisiae. Antonie Van Leeuwenhoek 96(3):355-9
|
| Rodley CD, et al. (2009) Global identification of yeast chromosome interactions using Genome conformation capture. Fungal Genet Biol 46(11):879-86
|
| Ruderfer DM, et al. (2009) Using expression and genotype to predict drug response in yeast. PLoS One 4(9):e6907
|
| Shibata Y, et al. (2009) Yeast genome analysis identifies chromosomal translocation, gene conversion events and several sites of Ty element insertion. Nucleic Acids Res 37(19):6454-65
|
| Smith AM, et al. (2009) Quantitative phenotyping via deep barcode sequencing. Genome Res 19(10):1836-42
|
| Sung HM, et al. (2009) Roles of trans and cis variation in yeast intraspecies evolution of gene expression. Mol Biol Evol 26(11):2533-8
|
| Taddei A, et al. (2009) The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion. Genome Res 19(4):611-25
|
| Tritchler D, et al. (2009) Filtering genes for cluster and network analysis. BMC Bioinformatics 10:193
|
| Tuller T, et al. (2009) Higher-order genomic organization of cellular functions in yeast. J Comput Biol 16(2):303-16
|
| Vavouri T, et al. (2009) Intrinsic protein disorder and interaction promiscuity are widely associated with dosage sensitivity. Cell 138(1):198-208
|
| Venters BJ and Pugh BF (2009) A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome. Genome Res 19(3):360-71
|
| Webb EC and Westhead DR (2009) The transcriptional regulation of protein complexes; a cross-species perspective. Genomics 94(6):369-76
|
| Wu Q, et al. (2009) Prediction of nucleosome positions in the yeast genome based on matched mirror position filtering. Bioinformation 3(10):454-9
|
| Xu Z, et al. (2009) Bidirectional promoters generate pervasive transcription in yeast. Nature 457(7232):1033-7
|
| Yassour M, et al. (2009) Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proc Natl Acad Sci U S A 106(9):3264-9
|
| Yeger-Lotem E, et al. (2009) Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity. Nat Genet 41(3):316-23
|
| Zaborske JM, et al. (2009) Genome-wide Analysis of tRNA Charging and Activation of the eIF2 Kinase Gcn2p. J Biol Chem 284(37):25254-67
|
| Zawadzki KA, et al. (2009) Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae. Mol Biol Cell 20(15):3503-13
|
| Zhou T, et al. (2009) Translationally optimal codons associate with structurally sensitive sites in proteins. Mol Biol Evol 26(7):1571-80
|
| Zhu C, et al. (2009) High-resolution DNA-binding specificity analysis of yeast transcription factors. Genome Res 19(4):556-66
|
| Zou Y, et al. (2009) Uncovering genetic regulatory network divergence between duplicate genes using yeast eQTL landscape. J Exp Zool B Mol Dev Evol 312(7):722-33
|
| Ansel J, et al. (2008) Cell-to-cell stochastic variation in gene expression is a complex genetic trait. PLoS Genet 4(4):e1000049
|
| Badis G, et al. (2008) A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters. Mol Cell 32(6):878-87
|
| Bagshaw AT, et al. (2008) High frequency of microsatellites in S. cerevisiae meiotic recombination hotspots. BMC Genomics 9:49
|
| Berger AB, et al. (2008) High-resolution statistical mapping reveals gene territories in live yeast. Nat Methods 5(12):1031-7
|
| Borneman AR, et al. (2008) Comparative genome analysis of a Saccharomyces cerevisiae wine strain. FEMS Yeast Res 8(7):1185-95
|