References Associated with Literature Topic: Other genomic analysis Help


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Adachi M and Cavalcanti AR  (2009) Tandem stop codons in ciliates that reassign stop codons. J Mol Evol 68(4):424-31
Borde V, et al.  (2009) Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. EMBO J 28(2):99-111
Buchler NE and Cross FR  (2009) Protein sequestration generates a flexible ultrasensitive response in a genetic network. Mol Syst Biol 5:272
Casper AM, et al.  (2009) Chromosome aberrations resulting from double-strand DNA breaks at a naturally occurring yeast fragile site composed of inverted ty elements are independent of Mre11p and Sae2p. Genetics 183(2):423-39, 1SI-26SI
Cubillos FA, et al.  (2009) Self-fertilization is the main sexual reproduction mechanism in native wine yeast populations. FEMS Microbiol Ecol 67(1):162-70
Das S, et al.  (2009) Analyzing gene expression from relative codon usage bias in Yeast genome: a statistical significance and biological relevance. Gene 443(1-2):121-31
Ehrenreich IM, et al.  (2009) Genetic dissection of complex traits in yeast: insights from studies of gene expression and other phenotypes in the BYxRM cross. Cold Spring Harb Symp Quant Biol 74():145-53
Ejsing CS, et al.  (2009) Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proc Natl Acad Sci U S A 106(7):2136-41
Field Y, et al.  (2009) Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet 41(4):438-45
Freckleton G, et al.  (2009) Microarray profiling of phage-display selections for rapid mapping of transcription factor-DNA interactions. PLoS Genet 5(4):e1000449
Fritsch ES, et al.  (2009) Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 10:99
Gustafsson M, et al.  (2009) Genome-wide system analysis reveals stable yet flexible network dynamics in yeast. IET Syst Biol 3(4):219
Halder K, et al.  (2009) Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals. Mol Biosyst 5(12):1703-12
Hesselberth JR, et al.  (2009) Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6(4):283-9
Holbein S, et al.  (2009) Cordycepin interferes with 3' end formation in yeast independently of its potential to terminate RNA chain elongation. RNA 15(5):837-49
James SA, et al.  (2009) Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res 19(4):626-35
Jo WJ, et al.  (2009) Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae. BMC Genomics 10:130
Kaplan N, et al.  (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458(7236):362-6
Kershaw CJ, et al.  (2009) Mutations in the U5 snRNA result in altered splicing of subsets of pre-mRNAs and reduced stability of Prp8. RNA 15(7):1292-304
Khanna M, et al.  (2009) A systematic characterization of Cwc21, the yeast ortholog of the human spliceosomal protein SRm300. RNA 15(12):2174-85
Kim HS and Fay JC  (2009) A Combined-Cross Analysis Reveals Genes With Drug-Specific and Background-Dependent Effects on Drug Sensitivity in Saccharomyces cerevisiae. Genetics 183(3):1141-51
Knoch TA, et al.  (2009) Fine-structured multi-scaling long-range correlations in completely sequenced genomes--features, origin, and classification. Eur Biophys J 38(6):757-79
Kung LA, et al.  (2009) Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes. Mol Syst Biol 5:308
Li YD, et al.  (2009) Detecting positive selection in the budding yeast genome. J Evol Biol 22(12):2430-7
Marco A and Marin I  (2009) Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell. BMC Syst Biol 3:69
Mittal N, et al.  (2009) Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks. Proc Natl Acad Sci U S A 106(48):20300-5
Molin C, et al.  (2009) mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress. RNA 15(4):600-14
Munoz R, et al.  (2009) Multilocus sequence typing of oenological Saccharomyces cerevisiae strains. Food Microbiol 26(8):841-6
Neil H, et al.  (2009) Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457(7232):1038-42
Novo M, et al.  (2009) Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci U S A 106(38):16333-8