| Thompson DM and Parker R (2007) Cytoplasmic decay of intergenic transcripts in Saccharomyces cerevisiae. Mol Cell Biol 27(1):92-101
|
| Thorsen M, et al. (2007) Quantitative transcriptome, proteome, and sulfur metabolite profiling of the Saccharomyces cerevisiae response to arsenite. Physiol Genomics 30(1):35-43
|
| Tirosh I, et al. (2007) The pattern and evolution of yeast promoter bendability. Trends Genet 23(7):318-21
|
| Tsai HK, et al. (2007) Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system. BMC Genomics 8:352
|
| Whitehouse I, et al. (2007) Chromatin remodelling at promoters suppresses antisense transcription. Nature 450(7172):1031-5
|
| Yang C, et al. (2007) Prevalence of the initiator over the TATA box in human and yeast genes and identification of DNA motifs enriched in human TATA-less core promoters. Gene 389(1):52-65
|
| Zhang Z, et al. (2007) Genome-wide identification of spliced introns using a tiling microarray. Genome Res 17(4):503-9
|
| Ackermann M and Chao L (2006) DNA sequences shaped by selection for stability. PLoS Genet 2(2):e22
|
| Andoh T, et al. (2006) Visual screening for localized RNAs in yeast revealed novel RNAs at the bud-tip. Biochem Biophys Res Commun 351(4):999-1004
|
| Buchan JR, et al. (2006) tRNA properties help shape codon pair preferences in open reading frames. Nucleic Acids Res 34(3):1015-27
|
| Chong PK, et al. (2006) Isobaric tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections. J Proteome Res 5(5):1232-40
|
| Cliften PF, et al. (2006) After the duplication: gene loss and adaptation in Saccharomyces genomes. Genetics 172(2):863-72
|
| Cooper AA, et al. (2006) Alpha-synuclein blocks ER-Golgi traffic and Rab1 rescues neuron loss in Parkinson's models. Science 313(5785):324-8
|
| Gatbonton T, et al. (2006) Telomere length as a quantitative trait: genome-wide survey and genetic mapping of telomere length-control genes in yeast. PLoS Genet 2(3):e35
|
| Guan XL and Wenk MR (2006) Mass spectrometry-based profiling of phospholipids and sphingolipids in extracts from Saccharomyces cerevisiae. Yeast 23(6):465-77
|
| Ho SW, et al. (2006) Linking DNA-binding proteins to their recognition sequences by using protein microarrays. Proc Natl Acad Sci U S A 103(26):9940-5
|
| Hogan GJ, et al. (2006) Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters. PLoS Genet 2(9):e158
|
| Imoberdorf RM, et al. (2006) A role for gcn5-mediated global histone acetylation in transcriptional regulation. Mol Cell Biol 26(5):1610-6
|
| Ioshikhes IP, et al. (2006) Nucleosome positions predicted through comparative genomics. Nat Genet 38(10):1210-5
|
| Jensen LJ, et al. (2006) Co-evolution of transcriptional and post-translational cell-cycle regulation. Nature 443(7111):594-7
|
| Kovaleva GY, et al. (2006) Comparative genomics of transcriptional regulation in yeasts and its application to identification of a candidate alpha-isopropylmalate transporter. J Bioinform Comput Biol 4(5):981-98
|
| Liu X, et al. (2006) Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Genome Res 16(12):1517-28
|
| Raveendranathan M, et al. (2006) Genome-wide replication profiles of S-phase checkpoint mutants reveal fragile sites in yeast. EMBO J 25(15):3627-39
|
| Tsai HK, et al. (2006) Method for identifying transcription factor binding sites in yeast. Bioinformatics 22(14):1675-81
|
| Vieira A (2006) Comparative genetic mutation frequencies based on amino acid composition differences. Mutat Res 600(1-2):89-92
|
| Barker D and Pagel M (2005) Predicting functional gene links from phylogenetic-statistical analyses of whole genomes. PLoS Comput Biol 1(1):e3
|
| Bekaert M, et al. (2005) Identification of programmed translational -1 frameshifting sites in the genome of Saccharomyces cerevisiae. Genome Res 15(10):1411-20
|
| Bing N and Hoeschele I (2005) Genetical genomics analysis of a yeast segregant population for transcription network inference. Genetics 170(2):533-42
|
| Blank LM, et al. (2005) Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast. Genome Biol 6(6):R49
|
| Braglia P, et al. (2005) Sequence context effects on oligo(dT) termination signal recognition by Saccharomyces cerevisiae RNA polymerase III. J Biol Chem 280(20):19551-62
|
