| Despons L, et al. (2010) Genome-wide computational prediction of tandem gene arrays: application in yeasts. BMC Genomics 11(1):56
|
| Hansen L, et al. (2010) Many sequence-specific chromatin modifying protein-binding motifs show strong positional preferences for potential regulatory regions in the Saccharomyces cerevisiae genome. Nucleic Acids Res ()
|
| Ozsolak F, et al. (2010) Digital transcriptome profiling from attomole-level RNA samples. Genome Res ()
|
| Tuller T, et al. (2010) Translation efficiency is determined by both codon bias and folding energy. Proc Natl Acad Sci U S A ()
|
| Vaillant C, et al. (2010) A novel strategy of transcription regulation by intragenic nucleosome ordering. Genome Res 20(1):59-67
|
| Weiner A, et al. (2010) High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res 20(1):90-100
|
| Adachi M and Cavalcanti AR (2009) Tandem stop codons in ciliates that reassign stop codons. J Mol Evol 68(4):424-31
|
| Borde V, et al. (2009) Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites. EMBO J 28(2):99-111
|
| Buchler NE and Cross FR (2009) Protein sequestration generates a flexible ultrasensitive response in a genetic network. Mol Syst Biol 5:272
|
| Casper AM, et al. (2009) Chromosome aberrations resulting from double-strand DNA breaks at a naturally occurring yeast fragile site composed of inverted ty elements are independent of Mre11p and Sae2p. Genetics 183(2):423-39, 1SI-26SI
|
| Cubillos FA, et al. (2009) Self-fertilization is the main sexual reproduction mechanism in native wine yeast populations. FEMS Microbiol Ecol 67(1):162-70
|
| Das S, et al. (2009) Analyzing gene expression from relative codon usage bias in Yeast genome: a statistical significance and biological relevance. Gene 443(1-2):121-31
|
| Ehrenreich IM, et al. (2009) Genetic Dissection of Complex Traits in Yeast: Insights from Studies of Gene Expression and Other Phenotypes in the BYxRM Cross. Cold Spring Harb Symp Quant Biol
|
| Ejsing CS, et al. (2009) Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proc Natl Acad Sci U S A 106(7):2136-41
|
| Field Y, et al. (2009) Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization. Nat Genet 41(4):438-45
|
| Freckleton G, et al. (2009) Microarray profiling of phage-display selections for rapid mapping of transcription factor-DNA interactions. PLoS Genet 5(4):e1000449
|
| Fritsch ES, et al. (2009) Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae. BMC Genomics 10:99
|
| Gustafsson M, et al. (2009) Genome-wide system analysis reveals stable yet flexible network dynamics in yeast. IET Syst Biol 3(4):219
|
| Halder K, et al. (2009) Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals. Mol Biosyst 5(12):1703-12
|
| Hesselberth JR, et al. (2009) Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 6(4):283-9
|
| Holbein S, et al. (2009) Cordycepin interferes with 3' end formation in yeast independently of its potential to terminate RNA chain elongation. RNA 15(5):837-49
|
| James SA, et al. (2009) Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole-genome resequencing. Genome Res 19(4):626-35
|
| Jo WJ, et al. (2009) Novel insights into iron metabolism by integrating deletome and transcriptome analysis in an iron deficiency model of the yeast Saccharomyces cerevisiae. BMC Genomics 10:130
|
| Kaplan N, et al. (2009) The DNA-encoded nucleosome organization of a eukaryotic genome. Nature 458(7236):362-6
|
| Kershaw CJ, et al. (2009) Mutations in the U5 snRNA result in altered splicing of subsets of pre-mRNAs and reduced stability of Prp8. RNA 15(7):1292-304
|
| Kim HS and Fay JC (2009) A Combined-Cross Analysis Reveals Genes With Drug-Specific and Background-Dependent Effects on Drug Sensitivity in Saccharomyces cerevisiae. Genetics 183(3):1141-51
|
| Kim Y, et al. (2009) The Enrichment of TATA Box and the Scarcity of Depleted Proximal Nucleosome in the Promoters of Duplicated Yeast Genes. J Mol Evol ()
|
| Knoch TA, et al. (2009) Fine-structured multi-scaling long-range correlations in completely sequenced genomes--features, origin, and classification. Eur Biophys J 38(6):757-79
|
| Kung LA, et al. (2009) Global analysis of the glycoproteome in Saccharomyces cerevisiae reveals new roles for protein glycosylation in eukaryotes. Mol Syst Biol 5:308
|
| Li YD, et al. (2009) Detecting positive selection in the budding yeast genome. J Evol Biol 22(12):2430-7
|
