References Associated with Literature Topic: Large-scale protein modification Help


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Lu JY, et al.  (2008) Functional Dissection of a HECT Ubiquitin E3 Ligase. Mol Cell Proteomics 7(1):35-45
Ota K, et al.  (2008) A proteomic screen reveals the mitochondrial outer membrane protein Mdm34p as an essential target of the F-box protein Mdm30p. Genes Cells 13(10):1075-85
Payne SH, et al.  (2008) Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis. J Proteome Res 7(8):3373-3381
Ren J, et al.  (2008) CSS-Palm 2.0: an updated software for palmitoylation sites prediction. Protein Eng Des Sel 21(11):639-44
Seyfried NT, et al.  (2008) Systematic approach for validating the ubiquitinated proteome. Anal Chem 80(11):4161-9
Shen Y, et al.  (2008) De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins. Anal Chem 80(20):7742-54
Sprung R, et al.  (2008) Identification and Validation of Eukaryotic Aspartate and Glutamate Methylation in Proteins. J Proteome Res 7(3):1001-1006
Suter B, et al.  (2008) Exploring protein phosphorylation in response to DNA damage using differentially tagged yeast arrays. Biotechniques 45(5):581-4
Villen J, et al.  (2008) Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis. Proteomics 8(21):4444-52
de la Fuente van Bentem S, et al.  (2008) Towards functional phosphoproteomics by mapping differential phosphorylation events in signaling networks. Proteomics 8(21):4453-65
Bakalarski CE, et al.  (2007) The effects of mass accuracy, data acquisition speed, and search algorithm choice on peptide identification rates in phosphoproteomics. Anal Bioanal Chem 389(5):1409-19
Chi A, et al.  (2007) Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry. Proc Natl Acad Sci U S A 104(7):2193-8
Gupta R, et al.  (2007) Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast. Mol Syst Biol 3:116
Li X, et al.  (2007) Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae. J Proteome Res 6(3):1190-7
Reinders J, et al.  (2007) Profiling phosphoproteins of yeast mitochondria reveals a role of phosphorylation in assembly of the ATP synthase. Mol Cell Proteomics 6(11):1896-906
Smolka MB, et al.  (2007) Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases. Proc Natl Acad Sci U S A 104(25):10364-9
Xie H, et al.  (2007) Preparative peptide isoelectric focusing as a tool for improving the identification of lysine-acetylated peptides from complex mixtures. J Proteome Res 6(5):2019-26
Le Moan N, et al.  (2006) The Saccharomyces cerevisiae proteome of oxidized protein thiols: contrasted functions for the thioredoxin and glutathione pathways. J Biol Chem 281(15):10420-30
Roth AF, et al.  (2006) Proteomic identification of palmitoylated proteins. Methods 40(2):135-42
Tagwerker C, et al.  (2006) A tandem affinity tag for two-step purification under fully denaturing conditions: application in ubiquitin profiling and protein complex identification combined with in vivocross-linking. Mol Cell Proteomics 5(4):737-48
Augustin S, et al.  (2005) Characterization of peptides released from mitochondria: evidence for constant proteolysis and peptide efflux. J Biol Chem 280(4):2691-9
Denison C, et al.  (2005) A proteomic strategy for gaining insights into protein sumoylation in yeast. Mol Cell Proteomics 4(3):246-54
Dephoure N, et al.  (2005) Combining chemical genetics and proteomics to identify protein kinase substrates. Proc Natl Acad Sci U S A 102(50):17940-5
Gruhler A, et al.  (2005) Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol Cell Proteomics 4(3):310-27
Kus B, et al.  (2005) A high throughput screen to identify substrates for the ubiquitin ligase Rsp5. J Biol Chem 280(33):29470-8
Mah AS, et al.  (2005) Substrate specificity analysis of protein kinase complex Dbf2-Mob1 by peptide library and proteome array screening. BMC Biochem 6():22
Makrantoni V, et al.  (2005) Rapid enrichment and analysis of yeast phosphoproteins using affinity chromatography, 2D-PAGE and peptide mass fingerprinting. Yeast 22(5):401-14
Mayor T, et al.  (2005) Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets. Mol Cell Proteomics 4(6):741-51
Peng J and Cheng D  (2005) Proteomic analysis of ubiquitin conjugates in yeast. Methods Enzymol 399:367-81
Ptacek J, et al.  (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-84