References Associated with Literature Topic: Large-scale protein modification Help

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Radivojac P, et al.  (2010) Identification, analysis, and prediction of protein ubiquitination sites. Proteins 78(2):365-80
Amoutzias GD, et al.  (2009) Posttranslational regulation impacts the fate of duplicated genes. Proc Natl Acad Sci U S A ()
Annan RB, et al.  (2009) A biochemical genomics screen for substrates of Ste20p kinase enables the in silico prediction of novel substrates. PLoS One 4(12):e8279
Arnesen T, et al.  (2009) Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans. Proc Natl Acad Sci U S A 106(20):8157-62
Bhattacharjee A, et al.  (2009) In vivo protein tyrosine nitration in S. cerevisiae: Identification of tyrosine-nitrated proteins in mitochondria. Biochem Biophys Res Commun 388(3):612-7
Gander S, et al.  (2009) A modified KESTREL search reveals a basophilic substrate consensus for the Saccharomyces cerevisiae Npr1 protein kinase. J Proteome Res 8(11):5305-16
Holt LJ, et al.  (2009) Global analysis of Cdk1 substrate phosphorylation sites provides insights into evolution. Science 325(5948):1682-6
Huber A, et al.  (2009) Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis. Genes Dev 23(16):1929-43
Lin YY, et al.  (2009) Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis. Cell 136(6):1073-84
Magherini F, et al.  (2009) Different carbon sources affect lifespan and protein redox state during Saccharomyces cerevisiae chronological ageing. Cell Mol Life Sci 66(5):933-47
McDonagh B, et al.  (2009) Shotgun redox proteomics identifies specifically modified cysteines in key metabolic enzymes under oxidative stress in Saccharomyces cerevisiae. J Proteomics 72(4):677-89
Mok J, et al.  (2009) Global identification of protein kinase substrates by protein microarray analysis. Nat Protoc 4(12):1820-7
Rubio-Texeira M, et al.  (2009) Saccharomyces cerevisiae plasma membrane nutrient sensors and their role in PKA signaling. FEMS Yeast Res
Soufi B, et al.  (2009) Global analysis of the yeast osmotic stress response by quantitative proteomics. Mol Biosyst 5(11):1337-46
Tao Z, et al.  (2009) Studies of the expression of human poly(ADP-ribose) polymerase-1 in Saccharomyces cerevisiae and identification of PARP-1 substrates by yeast proteome microarray screening. Biochemistry 48(49):11745-54
Xu P, et al.  (2009) Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation. Cell 137(1):133-45
Yu YQ, et al.  (2009) Phosphopeptide enrichment using microscale titanium dioxide solid phase extraction. J Sep Sci 32(8):1189-99
Albuquerque CP, et al.  (2008) A multidimensional chromatography technology for in-depth phosphoproteome analysis. Mol Cell Proteomics 7(7):1389-96
Gao X, et al.  (2008) Proteome-wide prediction of PKA phosphorylation sites in eukaryotic kingdom. Genomics 92(6):457-63
Kristjansdottir K, et al.  (2008) Phosphoprotein Profiling by PA-GeLC-MS/MS. J Proteome Res 7(7):2812-2824
Lu JY, et al.  (2008) Functional Dissection of a HECT Ubiquitin E3 Ligase. Mol Cell Proteomics 7(1):35-45
Ota K, et al.  (2008) A proteomic screen reveals the mitochondrial outer membrane protein Mdm34p as an essential target of the F-box protein Mdm30p. Genes Cells 13(10):1075-85
Payne SH, et al.  (2008) Phosphorylation-Specific MS/MS Scoring for Rapid and Accurate Phosphoproteome Analysis. J Proteome Res 7(8):3373-3381
Ren J, et al.  (2008) CSS-Palm 2.0: an updated software for palmitoylation sites prediction. Protein Eng Des Sel 21(11):639-44
Seyfried NT, et al.  (2008) Systematic approach for validating the ubiquitinated proteome. Anal Chem 80(11):4161-9
Shen Y, et al.  (2008) De novo sequencing of unique sequence tags for discovery of post-translational modifications of proteins. Anal Chem 80(20):7742-54
Sprung R, et al.  (2008) Identification and Validation of Eukaryotic Aspartate and Glutamate Methylation in Proteins. J Proteome Res 7(3):1001-1006
Suter B, et al.  (2008) Exploring protein phosphorylation in response to DNA damage using differentially tagged yeast arrays. Biotechniques 45(5):581-4
Villen J, et al.  (2008) Evaluation of the utility of neutral-loss-dependent MS3 strategies in large-scale phosphorylation analysis. Proteomics 8(21):4444-52
de la Fuente van Bentem S, et al.  (2008) Towards functional phosphoproteomics by mapping differential phosphorylation events in signaling networks. Proteomics 8(21):4453-65