| Wong J, et al. (2007) A Protein Interaction Map of the Mitotic Spindle. Mol Biol Cell 18(10):3800-3809
|
| van Noort V, et al. (2007) Exploration of the omics evidence landscape: adding qualitative labels to predicted protein-protein interactions. Genome Biol 8(9):R197
|
| Gavin AC, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440(7084):631-6
|
| Guerrero C, et al. (2006) An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network. Mol Cell Proteomics 5(2):366-78
|
| Hazbun TR and Miller JP (2006) Genome-Wide Analysis of Protein-Protein Interactions Using a Two-Hybrid Array: Amplification of ORFs.LID - 10.1101/pdb.prot4561 [doi]LID - pdb.prot4561 [pii] CSH Protoc 2006(4)
|
| Hazbun TR and Miller JP (2006) Genome-wide analysis of protein-protein interactions using a two-hybrid array: cloning by homologous recombination and high-throughput transformation.LID - 10.1101/pdb.prot4562 [doi]LID - pdb.prot4562 [pii] CSH Protoc 2006(4)
|
| Hertveldt K, et al. (2006) Whole genome phage display selects for proline-rich Boi polypeptides against Bem1p. Biotechnol Lett 28(16):1233-9
|
| Hesselberth JR, et al. (2006) Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins. Genome Biol 7(4):R30
|
| Jothi R, et al. (2006) Co-evolutionary Analysis of Domains in Interacting Proteins Reveals Insights into Domain-Domain Interactions Mediating Protein-Protein Interactions. J Mol Biol 362(4):861-75
|
| Krogan NJ, et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440(7084):637-43
|
| Lee WP, et al. (2006) Differential evolutionary conservation of motif modes in the yeast protein interaction network. BMC Genomics 7():89
|
| Li L, et al. (2006) Preferential duplication in the sparse part of yeast protein interaction network. Mol Biol Evol 23(12):2467-73
|
| Martin S, et al. (2005) Predicting protein-protein interactions using signature products. Bioinformatics 21(2):218-26
|
| Miller JP, et al. (2005) Large-scale identification of yeast integral membrane protein interactions. Proc Natl Acad Sci U S A 102(34):12123-8
|
| Millson SH, et al. (2005) A two-hybrid screen of the yeast proteome for Hsp90 interactors uncovers a novel Hsp90 chaperone requirement in the activity of a stress-activated mitogen-activated protein kinase, Slt2p (Mpk1p). Eukaryot Cell 4(5):849-60
|
| Tang X, et al. (2005) Genome-Wide Surveys for Phosphorylation-Dependent Substrates of SCF Ubiquitin Ligases. Methods Enzymol 399:433-58
|
| Zhao R, et al. (2005) Navigating the chaperone network: an integrative map of physical and genetic interactions mediated by the hsp90 chaperone. Cell 120(5):715-27
|
| Graumann J, et al. (2004) Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast. Mol Cell Proteomics 3(3):226-37
|
| Hall DA, et al. (2004) Regulation of gene expression by a metabolic enzyme. Science 306(5695):482-4
|
| Han DS, et al. (2004) PreSPI: a domain combination based prediction system for protein-protein interaction. Nucleic Acids Res 32(21):6312-20
|
| Huang TW, et al. (2004) POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. Bioinformatics 20(17):3273-6
|
| Przulj N, et al. (2004) Modeling interactome: scale-free or geometric? Bioinformatics 20(18):3508-15
|
| Roguev A, et al. (2004) A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe. Mol Cell Proteomics 3(2):125-32
|
| Bu D, et al. (2003) Topological structure analysis of the protein-protein interaction network in budding yeast. Nucleic Acids Res 31(9):2443-50
|
| Hazbun TR, et al. (2003) Assigning function to yeast proteins by integration of technologies. Mol Cell 12(6):1353-65
|
| Hertveldt K, et al. (2003) Identification of Gal80p-interacting proteins by Saccharomyces cerevisiae whole genome phage display. Gene 307():141-9
|
| Ng SK, et al. (2003) Integrative approach for computationally inferring protein domain interactions. Bioinformatics 19(8):923-9
|
| Qin H, et al. (2003) Evolution of the yeast protein interaction network. Proc Natl Acad Sci U S A 100(22):12820-4
|
| Shang C, et al. (2003) Kinetochore protein interactions and their regulation by the Aurora kinase Ipl1p. Mol Biol Cell 14(8):3342-55
|
| Gavin AC, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415(6868):141-7
|
