| Mosca R, et al. (2009) Pushing structural information into the yeast interactome by high-throughput protein docking experiments. PLoS Comput Biol 5(8):e1000490
|
| Sardiu ME, et al. (2009) Determining protein complex connectivity using a probabilistic deletion network derived from quantitative proteomics. PLoS One 4(10):e7310
|
| Tonikian R, et al. (2009) Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins. PLoS Biol 7(10):e1000218
|
| Tran N, et al. (2009) In silico construction of a protein interaction landscape for nucleotide excision repair. Cell Biochem Biophys 53(2):101-14
|
| Valente AX, et al. (2009) Functional organization of the yeast proteome by a yeast interactome map. Proc Natl Acad Sci U S A 106(5):1490-5
|
| Wodak SJ, et al. (2009) Challenges and Rewards of Interaction Proteomics. Mol Cell Proteomics 8(1):3-18
|
| Wu M, et al. (2009) A core-attachment based method to detect protein complexes in PPI networks. BMC Bioinformatics 10:169
|
| Yu X, et al. (2009) A novel scoring approach for protein co-purification data reveals high interaction specificity. PLoS Comput Biol 5(9):e1000515
|
| Zhang H, et al. (2009) A computationally guided protein-interaction screen uncovers coiled-coil interactions involved in vesicular trafficking. J Mol Biol 392(1):228-41
|
| Arnett DR, et al. (2008) A proteomics analysis of yeast Mot1p protein-protein associations: insights into mechanism. Mol Cell Proteomics 7(11):2090-106
|
| Bjorklund AK, et al. (2008) Quantitative assessment of the structural bias in protein-protein interaction assays. Proteomics 8(22):4657-67
|
| Brett CL, et al. (2008) Efficient termination of vacuolar Rab GTPase signaling requires coordinated action by a GAP and a protein kinase. J Cell Biol 182(6):1141-51
|
| Calvert ME, et al. (2008) Phosphorylation by casein kinase 2 regulates Nap1 localization and function. Mol Cell Biol 28(4):1313-25
|
| Cheng JS, et al. (2008) Comparative proteome analysis of robust Saccharomyces cerevisiae insights into industrial continuous and batch fermentation. Appl Microbiol Biotechnol 81(2):327-38
|
| Greene D, et al. (2008) Ensemble non-negative matrix factorization methods for clustering protein-protein interactions. Bioinformatics 24(15):1722-8
|
| Guerrero C, et al. (2008) Characterization of the proteasome interaction network using a QTAX-based tag-team strategy and protein interaction network analysis. Proc Natl Acad Sci U S A 105(36):13333-8
|
| Kast J (2008) Making connections for life: an in vivo map of the yeast interactome. HFSP J 2(5):244-50
|
| Kishi T, et al. (2008) A refined two-hybrid system reveals that SCFCdc4-dependent degradation of Swi5 contributes to the regulatory mechanism of S-phase entry. Proc Natl Acad Sci U S A 105(38):14497-502
|
| Li Z, et al. (2008) Cdc34p Ubiquitin-Conjugating Enzyme Is a Component of the Tombusvirus Replicase Complex and Ubiquitinates p33 Replication Protein. J Virol 82(14):6911-26
|
| Mohibullah N and Hahn S (2008) Site-specific cross-linking of TBP in vivo and in vitro reveals a direct functional interaction with the SAGA subunit Spt3. Genes Dev 22(21):2994-3006
|
| Shi MG, et al. (2008) A protein interaction network analysis for yeast integral membrane protein. Protein Pept Lett 15(7):692-9
|
| Tarassov K, et al. (2008) An in vivo map of the yeast protein interactome. Science 320(5882):1465-70
|
| Taverner T, et al. (2008) Subunit architecture of intact protein complexes from mass spectrometry and homology modeling. Acc Chem Res 41(5):617-27
|
| Betel D, et al. (2007) Structure-templated predictions of novel protein interactions from sequence information. PLoS Comput Biol 3(9):1783-9
|
| Fuentes JL, et al. (2007) In vivo functional characterization of the Saccharomyces cerevisiae 60S biogenesis GTPase Nog1. Mol Genet Genomics 278(1):105-23
|
| Gupta R, et al. (2007) Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast. Mol Syst Biol 3:116
|
| Kiemer L, et al. (2007) WI-PHI: A weighted yeast interactome enriched for direct physical interactions. Proteomics 7(6):932-43
|
| Poltermann S, et al. (2007) Gpm1p Is a Factor H-, FHL-1-, and Plasminogen-binding Surface Protein of Candida albicans. J Biol Chem 282(52):37537-44
|
| Schuster-Bockler B and Bateman A (2007) Reuse of structural domain-domain interactions in protein networks. BMC Bioinformatics 8:259
|
| Tardiff DF, et al. (2007) Protein characterization of Saccharomyces cerevisiae RNA polymerase II after in vivo cross-linking. Proc Natl Acad Sci U S A 104(50):19948-53
|