| Rost HL, et al. (2012) A computational tool to detect and avoid redundancy in selected reaction monitoring. Mol Cell Proteomics 11(8):540-9
|
| Spivak M, et al. (2012) Direct maximization of protein identifications from tandem mass spectra. Mol Cell Proteomics 11(2):M111.012161
|
| Stewart-Ornstein J, et al. (2012) Cellular Noise Regulons Underlie Fluctuations in Saccharomyces cerevisiae. Mol Cell 45(4):483-93
|
| Tkach JM, et al. (2012) Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress. Nat Cell Biol 14(9):966-76
|
| Tran DT, et al. (2012) Slow histidine H/D exchange protocol for thermodynamic analysis of protein folding and stability using mass spectrometry. Anal Chem 84(3):1653-60
|
| Voegtle FN, et al. (2012) Intermembrane space proteome of yeast mitochondria. Mol Cell Proteomics 11(12):1840-52
|
| Westman JO, et al. (2012) Proteomic Analysis of the Increased Stress Tolerance of Saccharomyces cerevisiae Encapsulated in Liquid Core Alginate-Chitosan Capsules. PLoS One 7(11):e49335
|
| Zhao Y, et al. (2012) Fully automatable two-dimensional hydrophilic interaction liquid chromatography-reversed phase liquid chromatography with online tandem mass spectrometry for shotgun proteomics. J Sep Sci 35(14):1755-63
|
| Zhou Z, et al. (2012) Ion-exchange-membrane-based enzyme micro-reactor coupled online with liquid chromatography-mass spectrometry for protein analysis. Anal Bioanal Chem 403(1):239-46
|
| Andrews GL, et al. (2011) Improving Proteome Coverage on a LTQ-Orbitrap Using Design of Experiments. J Am Soc Mass Spectrom 22(4):773-83
|
| Banci L, et al. (2011) Copper exposure effects on yeast mitochondrial proteome. J Proteomics 74(11):2522-35
|
| Bender T, et al. (2011) Mitochondrial enzymes are protected from stress-induced aggregation by mitochondrial chaperones and the Pim1/LON protease. Mol Biol Cell 22(5):541-54
|
| Bluemlein K and Ralser M (2011) Monitoring protein expression in whole-cell extracts by targeted label- and standard-free LC-MS/MS. Nat Protoc 6(6):859-69
|
| Braconi D, et al. (2011) Surfome analysis of a wild-type wine Saccharomyces cerevisiae strain. Food Microbiol 28(6):1220-30
|
| Carroll KM, et al. (2011) Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach. Mol Cell Proteomics 10(12):M111.007633
|
| Claydon AJ and Beynon RJ (2011) Protein Turnover Methods in Single-Celled Organisms: Dynamic SILAC. Methods Mol Biol 759():179-95
|
| Costenoble R, et al. (2011) Comprehensive quantitative analysis of central carbon and amino-acid metabolism in Saccharomyces cerevisiae under multiple conditions by targeted proteomics. Mol Syst Biol 7():464
|
| Davidson GS, et al. (2011) The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures. Mol Biol Cell 22(7):988-98
|
| Forsmark A, et al. (2011) Quantitative proteomics of yeast post-Golgi vesicles reveals a discriminating role for Sro7p in protein secretion. Traffic 12(6):740-53
|
| Geiler-Samerotte KA, et al. (2011) Misfolded proteins impose a dosage-dependent fitness cost and trigger a cytosolic unfolded protein response in yeast. Proc Natl Acad Sci U S A 108(2):680-5
|
| Geromanos SJ, et al. (2011) Simulating and validating proteomics data and search results. Proteomics 11(6):1189-211
|
| Helbig AO, et al. (2011) The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae. Mol Biosyst 7(12):3316-26
|
| Jimenez-Marti E, et al. (2011) Molecular response of Saccharomyces cerevisiae wine and laboratory strains to high sugar stress conditions. Int J Food Microbiol 145(1):211-20
|
| K Suresh K, et al. (2011) Comparative and chemical proteomic approaches reveal gatifloxacin deregulates enzymes involved in glucose metabolism. J Toxicol Sci 36(6):787-96
|
| Kim DR, et al. (2011) Differential chromatin proteomics of the MMS-induced DNA damage response in yeast. Proteome Sci 9(1):62
|
| Kubota T, et al. (2011) Quantitative proteomic analysis of chromatin reveals that Ctf18 acts in the DNA replication checkpoint. Mol Cell Proteomics 10(7):M110.005561
|
| Kwon T, et al. (2011) MSblender: A probabilistic approach for integrating peptide identifications from multiple database search engines. J Proteome Res 10(7):2949-58
|
| Li S, et al. (2011) On the accuracy and limits of peptide fragmentation spectrum prediction. Anal Chem 83(3):790-6
|
| Ma Y, et al. (2011) [Reversed-phase liquid chromatography with double gradient elution for the separation and mass spectrometric analysis of peptides]. Se Pu 29(3):205-11
|
| Malys N, et al. (2011) Protein Production in Saccharomyces cerevisiae for Systems Biology Studies. Methods Enzymol 500():197-212
|
