References Associated with Literature Topic: Genomic co-immunoprecipitation study Help


Citation
Meng FL, et al.  (2009) Sua5p a single-stranded telomeric DNA-binding protein facilitates telomere replication. EMBO J 28(10):1466-78
Mosley AL, et al.  (2009) Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation. Mol Cell 34(2):168-78
Ni L, et al.  (2009) Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev 23(11):1351-63
Ohuchi T, et al.  (2009) Accumulation of sumoylated Rad52 in checkpoint mutants perturbed in DNA replication. DNA Repair (Amst) 8(6):690-6
Pelechano V, et al.  (2009) Regulon-specific control of transcription elongation across the yeast genome. PLoS Genet 5(8):e1000614
Ruan J, et al.  (2009) An ensemble learning approach to reverse-engineering transcriptional regulatory networks from time-series gene expression data. BMC Genomics 10 Suppl 1:S8
Schulze JM, et al.  (2009) Linking cell cycle to histone modifications: SBF and H2B monoubiquitination machinery and cell-cycle regulation of H3K79 dimethylation. Mol Cell 35(5):626-41
Selth LA, et al.  (2009) An rtt109-independent role for vps75 in transcription-associated nucleosome dynamics. Mol Cell Biol 29(15):4220-34
Shor E, et al.  (2009) The origin recognition complex interacts with a subset of metabolic genes tightly linked to origins of replication. PLoS Genet 5(12):e1000755
Sperling AS and Grunstein M  (2009) Histone H3 N-terminus regulates higher order structure of yeast heterochromatin. Proc Natl Acad Sci U S A 106(32):13153-9
Sprouse RO, et al.  (2009) TATA-binding Protein Variants That Bypass the Requirement for Mot1 in Vivo. J Biol Chem 284(7):4525-35
Tavenet A, et al.  (2009) Genome-wide location analysis reveals a role for Sub1 in RNA polymerase III transcription. Proc Natl Acad Sci U S A 106(34):14265-70
Teytelman L, et al.  (2009) Impact of chromatin structures on DNA processing for genomic analyses. PLoS One 4(8):e6700
Tsang CK and Zheng XF  (2009) Opposing role of condensin and radiation-sensitive gene RAD52 in ribosomal DNA stability regulation. J Biol Chem 284(33):21908-19
Zhang Y, et al.  (2009) Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nat Struct Mol Biol 16(8):847-52
Zhu X and Gustafsson CM  (2009) Distinct differences in chromatin structure at subtelomeric X and Y' elements in budding yeast. PLoS One 4(7):e6363
van Werven FJ, et al.  (2009) Distinct promoter dynamics of the basal transcription factor TBP across the yeast genome. Nat Struct Mol Biol 16(10):1043-8
Capaldi AP, et al.  (2008) Structure and function of a transcriptional network activated by the MAPK Hog1. Nat Genet 40(11):1300-6
D'Ambrosio C, et al.  (2008) Identification of cis-acting sites for condensin loading onto budding yeast chromosomes. Genes Dev 22(16):2215-27
Darst RP, et al.  (2008) Slx5 promotes transcriptional silencing and is required for robust growth in the absence of Sir2. Mol Cell Biol 28(4):1361-72
Ghavi-Helm Y, et al.  (2008) Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription. Genes Dev 22(14):1934-47
Gossett AJ and Lieb JD  (2008) DNA Immunoprecipitation (DIP) for the Determination of DNA-Binding Specificity. CSH Protoc 2008():pdb.prot4972
Gradolatto A, et al.  (2008) Saccharomyces cerevisiae Yta7 Regulates Histone Gene Expression. Genetics 179(1):291-304
He Q, et al.  (2008) Mediator Requirement Downstream of Chromatin Remodeling during Transcriptional Activation of CHA1 in Yeast. J Biol Chem 283(9):5276-86
Marton HA and Desiderio S  (2008) The Paf1 complex promotes displacement of histones upon rapid induction of transcription by RNA polymerase II. BMC Mol Biol 9():4
Masson P, et al.  (2008) The dual control of TFIIB recruitment by NC2 is gene specific. Nucleic Acids Res 36(2):539-49
Mavrich TN, et al.  (2008) A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. Genome Res 18(7):1073-83
Parnell TJ, et al.  (2008) RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes. EMBO J 27(1):100-10
Roberts TM, et al.  (2008) Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase. Mol Biol Cell 19(1):171-80
Rougemaille M, et al.  (2008) THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association. Cell 135(2):308-21