References Associated with Literature Topic: Databases Help

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Boer VM, et al.  (2010) Growth-limiting intracellular metabolites in yeast growing under diverse nutrient limitations. Mol Biol Cell 21(1):198-211
Dehal PS, et al.  (2010) MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res 38(Database issue):D396-400
Engel SR, et al.  (2010) Saccharomyces Genome Database provides mutant phenotype data. Nucleic Acids Res 38(Database issue):D433-6
Koh JL, et al.  (2010) DRYGIN: a database of quantitative genetic interaction networks in yeast. Nucleic Acids Res 38(Database issue):D502-7
Park B and Han K  (2010) A reliability measure of protein-protein interactions and a reliability measure-based search engine. Comput Methods Biomech Biomed Engin 13(1):97-104
Paulovich AG, et al.  (2010) Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance. Mol Cell Proteomics 9(2):242-54
Portales-Casamar E, et al.  (2010) JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles. Nucleic Acids Res 38(Database issue):D105-10
Ren J, et al.  (2010) MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore. Nucleic Acids Res 38(Database issue):D155-60
Rhead B, et al.  (2010) The UCSC Genome Browser database: update 2010. Nucleic Acids Res 38(Database issue):D613-9
Schluter A, et al.  (2010) PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome. Nucleic Acids Res 38(Database issue):D800-5
Brown M, et al.  (2009) Mass spectrometry tools and metabolite-specific databases for molecular identification in metabolomics. Analyst 134(7):1322-32
Browne F, et al.  (2009) GRIP: A web-based system for constructing Gold Standard datasets for protein-protein interaction prediction. Source Code Biol Med 4:2
Chou CH, et al.  (2009) FMM: a web server for metabolic pathway reconstruction and comparative analysis. Nucleic Acids Res 37(Web Server issue):W129-34
Christie KR, et al.  (2009) Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns. Trends Microbiol 17(7):286-94
Czerwoniec A, et al.  (2009) MODOMICS: a database of RNA modification pathways. 2008 update. Nucleic Acids Res 37(Database issue):D118-21
Elstner M, et al.  (2009) The mitochondrial proteome database: MitoP2. Methods Enzymol 457:3-20
Everett L, et al.  (2009) PTM-Switchboard--a database of posttranslational modifications of transcription factors, the mediating enzymes and target genes. Nucleic Acids Res 37(Database issue):D66-71
Faust K, et al.  (2009) Metabolic pathfinding using RPAIR annotation. J Mol Biol 388(2):390-414
Grassl J, et al.  (2009) Analysis of the budding yeast pH 4-7 proteome in meiosis. Proteomics ()
Huang H, et al.  (2009) HistoneHits: A database for histone mutations and their phenotypes. Genome Res 19(4):674-81
Mattanovich D, et al.  (2009) Genome, secretome and glucose transport highlight unique features of the protein production host Pichia pastoris. Microb Cell Fact 8:29
Nakayama H, et al.  (2009) Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data. Nucleic Acids Res 37(6):e47
Newburger DE and Bulyk ML  (2009) UniPROBE: an online database of protein binding microarray data on protein-DNA interactions. Nucleic Acids Res 37(Database issue):D77-82
Pu S, et al.  (2009) Up-to-date catalogues of yeast protein complexes. Nucleic Acids Res 37(3):825-31
Sherman DJ, et al.  (2009) Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes. Nucleic Acids Res 37(Database issue):D550-4
Smith AC and Robinson AJ  (2009) MitoMiner, an Integrated Database for the Storage and Analysis of Mitochondrial Proteomics Data. Mol Cell Proteomics 8(6):1324-37
Urbanski WM and Condie BG  (2009) Textpresso site-specific recombinases: A text-mining server for the recombinase literature including Cre mice and conditional alleles. Genesis 47(12):842-6
Zhang R and Lin Y  (2009) DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes. Nucleic Acids Res 37(Database issue):D455-8
Zhao M, et al.  (2009) RLEdb: a database of rate-limiting enzymes and their regulation in human, rat, mouse, yeast and E. coli. Cell Res 19(6):793-795
Alfieri R, et al.  (2008) The cell cycle DB: a systems biology approach to cell cycle analysis. Nucleic Acids Res 36(Database issue):D641-5