References Associated with Literature Topic: DNA/RNA Sequence Features Help


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Horigome C, et al.  (2011) Ribosome biogenesis factors bind a nuclear envelope SUN domain protein to cluster yeast telomeres.LID - 10.1038/emboj.2011.267 [doi] EMBO J ()
Hossain MA, et al.  (2011) Key features of the two-intron Saccharomyces cerevisiae gene SUS1 contribute to its alternative splicing. Nucleic Acids Res 39(19):8612-27
Houghtaling S, et al.  (2011) Molecular assays to investigate chromatin changes during DNA double-strand break repair in yeast. Methods Mol Biol 745():79-97
Humphrey-Dixon EL, et al.  (2011) Comparative genome analysis suggests characteristics of yeast inverted repeats that are important for transcriptional activity. Genome 54(11):934-42
Jamonnak N, et al.  (2011) Yeast Nrd1, Nab3, and Sen1 transcriptome-wide binding maps suggest multiple roles in post-transcriptional RNA processing. RNA 17(11):2011-25
Jeyaram K, et al.  (2011) Geographical markers for Saccharomyces cerevisiae strains with similar technological origins domesticated for rice-based ethnic fermented beverages production in North East India. Antonie Van Leeuwenhoek 100(4):569-78
Kanter DM and Kaplan DL  (2011) Sld2 binds to origin single-stranded DNA and stimulates DNA annealing. Nucleic Acids Res 39(7):2580-92
Karijolich J and Yu YT  (2011) Converting nonsense codons into sense codons by targeted pseudouridylation. Nature 474(7351):395-8
Kasahara K, et al.  (2011) Hmo1 directs pre-initiation complex assembly to an appropriate site on its target gene promoters by masking a nucleosome-free region. Nucleic Acids Res 39(10):4136-50
Khmelinskii A, et al.  (2011) Seamless gene tagging by endonuclease-driven homologous recombination. PLoS One 6(8):e23794
Kilchert C and Spang A  (2011) Cotranslational transport of ABP140 mRNA to the distal pole of S. cerevisiae.LID - 10.1038/emboj.2011.247 [doi] EMBO J ()
Kleinschmidt RA, et al.  (2011) Autoregulation of an RNA polymerase II promoter by the RNA polymerase III transcription factor III C (TF(III)C) complex. Proc Natl Acad Sci U S A 108(20):8385-9
Krivos KL, et al.  (2011) Removal of 3'-phosphate group by bacterial alkaline phosphatase improves oligonucleotide sequence coverage of RNase digestion products analyzed by collision-induced dissociation mass spectrometry. Rapid Commun Mass Spectrom 25(23):3609-16
Kruk JA, et al.  (2011) The multifunctional Ccr4-Not complex directly promotes transcription elongation. Genes Dev 25(6):581-93
Kudla G, et al.  (2011) Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc Natl Acad Sci U S A 108(24):10010-5
Kumar D, et al.  (2011) Mechanisms of mutagenesis in vivo due to imbalanced dNTP pools. Nucleic Acids Res 39(4):1360-71
Kuruppu S, et al.  (2011) Iterative Dictionary Construction for Compression of Large DNA Datasets. IEEE/ACM Trans Comput Biol Bioinform ()
Kvitek DJ and Sherlock G  (2011) Reciprocal Sign Epistasis between Frequently Experimentally Evolved Adaptive Mutations Causes a Rugged Fitness Landscape. PLoS Genet 7(4):e1002056
Kwon DW and Ahn SH  (2011) Role of yeast JmjC-domain containing histone demethylases in actively transcribed regions. Biochem Biophys Res Commun 410(3):614-9
Lada AG, et al.  (2011) Mutator effects and mutation signatures of editing deaminases produced in bacteria and yeast. Biochemistry (Mosc) 76(1):131-46
Li P, et al.  (2011) Tracking chromosome dynamics in live yeast cells: coordinated movement of rDNA homologs and anaphase disassembly of the nucleolus during meiosis. Chromosome Res 19(8):1013-26
Li S  (2011) N-methylpurines are heterogeneously repaired in human mitochondria but not evidently repaired in yeast mitochondria. DNA Repair (Amst) 10(1):65-72
Li XR, et al.  (2011) Bacterial and fungal diversity in the traditional Chinese liquor fermentation process. Int J Food Microbiol 146(1):31-7
Liang CY, et al.  (2011) The histone H3K36 demethylase Rph1/KDM4 regulates the expression of the photoreactivation gene PHR1. Nucleic Acids Res 39(10):4151-65
Lindstrom DL, et al.  (2011) Replicative Age Induces Mitotic Recombination in the Ribosomal RNA Gene Cluster of Saccharomyces cerevisiae. PLoS Genet 7(3):e1002015
Lippert MJ, et al.  (2011) Role for topoisomerase 1 in transcription-associated mutagenesis in yeast. Proc Natl Acad Sci U S A 108(2):698-703
Lopes J, et al.  (2011) G-quadruplex-induced instability during leading-strand replication.LID - 10.1038/emboj.2011.316 [doi] EMBO J ()
Lorch Y, et al.  (2011) Selective removal of promoter nucleosomes by the RSC chromatin-remodeling complex.LID - 10.1038/nsmb.2072 [doi] Nat Struct Mol Biol ()
Lunde BM, et al.  (2011) Structural insights into cis element recognition of non-polyadenylated RNAs by the Nab3-RRM. Nucleic Acids Res 39(1):337-46
Ma P and Xia X  (2011) Factors affecting splicing strength of yeast genes. Comp Funct Genomics 2011():212146