References Associated with Literature Topic: DNA/RNA Sequence Features Help


Citation
Wippo CJ, et al.  (2011) The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes. EMBO J 30(7):1277-88
Wu Q, et al.  (2011) Correlation between the flexibility and periodic dinucleotide patterns in yeast nucleosomal DNA sequences. J Theor Biol 284(1):92-8
Wu YH, et al.  (2011) Transcriptional regulation of the Zrg17 zinc transporter of the yeast secretory pathway. Biochem J 435(1):259-66
Xia X, et al.  (2011) Translation initiation: a regulatory role for poly(A) tracts in front of the AUG codon in Saccharomyces cerevisiae. Genetics 189(2):469-78
Xu Z, et al.  (2011) Antisense expression increases gene expression variability and locus interdependency. Mol Syst Biol 7():468
Yamanishi M, et al.  (2011) TPS1 terminator increases mRNA and protein yield in a Saccharomyces cerevisiae expression system. Biosci Biotechnol Biochem 75(11):2234-6
Yosefzon Y, et al.  (2011) Divergent RNA binding specificity of yeast Puf2p. RNA 17(8):1479-88
Young CL and Karbstein K  (2011) The roles of S1 RNA-binding domains in Rrp5's interactions with pre-rRNA. RNA 17(3):512-21
Yu Q, et al.  (2011) Roles of chromatin remodeling factors in the formation and maintenance of heterochromatin structure. J Biol Chem 286(16):14659-69
Yu Y, et al.  (2011) A conserved patch near the C terminus of histone H4 is required for genome stability in budding yeast. Mol Cell Biol 31(11):2311-25
Yukawa Y, et al.  (2011) A common sequence motif involved in selection of transcription start sites of Arabidopsis and budding yeast tRNA genes. Genomics 97(3):166-72
Zappulla DC, et al.  (2011) Ku can contribute to telomere lengthening in yeast at multiple positions in the telomerase RNP. RNA 17(2):298-311
Zeevi D, et al.  (2011) Compensation for differences in gene copy number among yeast ribosomal proteins is encoded within their promoters. Genome Res 21(12):2114-28
Zhang F and Hinnebusch AG  (2011) An upstream ORF with non-AUG start codon is translated in vivo but dispensable for translational control of GCN4 mRNA. Nucleic Acids Res 39(8):3128-40
Zhao J, et al.  (2011) The histone variant H2A.Z interconverts two stable epigenetic chromatin states. Biochem J 439(3):487-95
Zou Y, et al.  (2011) Predominant gain of promoter TATA box after gene duplication associated with stress responses. Mol Biol Evol 28(10):2893-904
van Nues RW, et al.  (2011) Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing. EMBO J ()
Ahmed S, et al.  (2010) DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery. Nat Cell Biol 12(2):111-8
Aho T, et al.  (2010) Reconstruction and validation of RefRec: a global model for the yeast molecular interaction network. PLoS One 5(5):e10662
Araya CL, et al.  (2010) Whole-genome sequencing of a laboratory-evolved yeast strain. BMC Genomics 11():88
Bai L, et al.  (2010) Nucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle. Dev Cell 18(4):544-55
Bermudez-Lopez M, et al.  (2010) The Smc5/6 complex is required for dissolution of DNA-mediated sister chromatid linkages. Nucleic Acids Res 38(19):6502-12
Bodi Z, et al.  (2010) Yeast targets for mRNA methylation. Nucleic Acids Res 38(16):5327-35
Booth LN, et al.  (2010) Intercalation of a new tier of transcription regulation into an ancient circuit. Nature 468(7326):959-63
Brezna B, et al.  (2010) Evaluation of fungal and yeast diversity in Slovakian wine-related microbial communities. Antonie Van Leeuwenhoek 98(4):519-29
Brickner DG, et al.  (2010) Quantitative localization of chromosomal Loci by immunofluorescence. Methods Enzymol 470():569-80
Carrillo Oesterreich F, et al.  (2010) Global analysis of nascent RNA reveals transcriptional pausing in terminal exons. Mol Cell 40(4):571-81
Casado C, et al.  (2010) Regulation of Trk-dependent potassium transport by the calcineurin pathway involves the Hal5 kinase. FEBS Lett 584(11):2415-2420
Castro-Prego R, et al.  (2010) Ixr1p regulates oxygen-dependent HEM13 transcription. FEMS Yeast Res 10(3):309-21
Castro-Prego R, et al.  (2010) Regulatory factors controlling transcription of Saccharomyces cerevisiae IXR1 by oxygen levels: a model of transcriptional adaptation from aerobiosis to hypoxia implicating ROX1 and IXR1 cross-regulation. Biochem J 425(1):235-43