| Michaut M and Bader GD (2012) Multiple genetic interaction experiments provide complementary information useful for gene function prediction. PLoS Comput Biol 8(6):e1002559
|
| Mine-Hattab J and Rothstein R (2012) Increased chromosome mobility facilitates homology search during recombination.LID - 10.1038/ncb2472 [doi] Nat Cell Biol ()
|
| Mira NP, et al. (2012) Characterization of complex regulatory networks and identification of promoter regulatory elements in yeast: "in silico" and "wet-lab" approaches. Methods Mol Biol 809():27-48
|
| Mishima H, et al. (2012) The Ruby UCSC API: accessing the UCSC genome database using Ruby. BMC Bioinformatics 13(1):240
|
| Moisset P, et al. (2012) Continuous modeling of metabolic networks with gene regulation in yeast and in vivo determination of rate parameters. Biotechnol Bioeng 109(9):2325-39
|
| Money D and Whelan S (2012) Characterizing the phylogenetic tree-search problem. Syst Biol 61(2):228-39
|
| Moriya H, et al. (2012) Robustness analysis of cellular systems using the genetic tug-of-war method. Mol Biosyst 8(10):2513-22
|
| Morra G, et al. (2012) Corresponding Functional Dynamics across the Hsp90 Chaperone Family: Insights from a Multiscale Analysis of MD Simulations. PLoS Comput Biol 8(3):e1002433
|
| Morshed N, et al. (2012) Simultaneous learning of instantaneous and time-delayed genetic interactions using novel information theoretic scoring technique. BMC Syst Biol 6(1):62
|
| Mosca R, et al. (2012) The role of structural disorder in the rewiring of protein interactions through evolution. Mol Cell Proteomics 11(7):M111.014969
|
| Moser C and Gupta M (2012) A Generalized Hidden Markov Model for Determining Sequence-based Predictors of Nucleosome Positioning.LID - 10.2202/1544-6115.1707 [doi]LID - /j/sagmb.2012.11.issue-2/1544-6115.1707/1544-6115.1707.xml [pii] Stat Appl Genet Mol Biol 11(2)
|
| Mukhopadhyay A, et al. (2012) Detecting protein complexes in a PPI network: a gene ontology based multi-objective evolutionary approach. Mol Biosyst 8(11):3036-48
|
| Muller S, et al. (2012) A new dynamic model for highly efficient mass transfer in aerated bioreactors and consequences for kL a identification. Biotechnol Bioeng 109(12):2997-3006
|
| Murray SC, et al. (2012) A pre-initiation complex at the 3'-end of genes drives antisense transcription independent of divergent sense transcription. Nucleic Acids Res 40(6):2432-44
|
| Murthy GS, et al. (2012) A simultaneous saccharification and fermentation model for dynamic growth environments. Bioprocess Biosyst Eng 35(4):519-34
|
| Naeem H, et al. (2012) Rigorous assessment of gene set enrichment tests. Bioinformatics 28(11):1480-6
|
| Nakabayashi J (2012) Optimal ratio of scaffold complex to free Fus3 to maximise the accumulation of phosphorylated Fus3 in yeast pheromone signalling pathway. IET Syst Biol 6(1):9-21
|
| Navlakha S, et al. (2012) A Network-based Approach for Predicting Missing Pathway Interactions. PLoS Comput Biol 8(8):e1002640
|
| Nepusz T, et al. (2012) Detecting overlapping protein complexes in protein-protein interaction networks.LID - 10.1038/nmeth.1938 [doi] Nat Methods ()
|
| Neto EC, et al. (2012) Quantile-based permutation thresholds for quantitative trait loci hotspots. Genetics 191(4):1355-65
|
| Nevozhay D, et al. (2012) Mapping the environmental fitness landscape of a synthetic gene circuit. PLoS Comput Biol 8(4):e1002480
|
| Niederberger T, et al. (2012) MC EMiNEM Maps the Interaction Landscape of the Mediator. PLoS Comput Biol 8(6):e1002568
|
| Nijkamp JF, et al. (2012) De novo detection of copy number variation by co-assembly. Bioinformatics 28(24):3195-202
|
| Nikerel E, et al. (2012) Understanding Regulation of Metabolism through Feasibility Analysis. PLoS One 7(7):e39396
|
| Nookaew I, et al. (2012) A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae. Nucleic Acids Res 40(20):10084-97
|
| Ohnuki S, et al. (2012) Analysis of the biological activity of a novel 24-membered macrolide JBIR-19 in Saccharomyces cerevisiae by the morphological imaging program CalMorph. FEMS Yeast Res 12(3):293-304
|
| Pache RA and Aloy P (2012) A novel framework for the comparative analysis of biological networks. PLoS One 7(2):e31220
|
| Pache RA, et al. (2012) NetAligner--a network alignment server to compare complexes, pathways and whole interactomes. Nucleic Acids Res 40(Web Server issue):W157-61
|
| Padmanabhan K, et al. (2012) Functional annotation of hierarchical modularity. PLoS One 7(4):e33744
|
| Pang CN, et al. (2012) A multidimensional matrix for systems biology research and its application to interaction networks. J Proteome Res 11(11):5204-20
|