Brownridge P, et al. (2013) Quantitative analysis of chaperone network throughput in budding yeast. Proteomics 13(8):1276-91
Abstract: The network of molecular chaperones mediates the folding and translocation of the many proteins encoded in the genome of eukaryotic organisms, as well as a response to stress. It has been particularly well characterised in the budding yeast, Saccharomyces cerevisiae, where 63 known chaperones have been annotated and recent affinity purification and MS/MS experiments have helped characterise the attendant network of chaperone targets to a high degree. In this study, we apply our QconCAT methodology to directly quantify the set of yeast chaperones in absolute terms (copies per cell) via SRM MS. Firstly, we compare these to existing quantitative estimates of these yeast proteins, highlighting differences between approaches. Secondly, we cast the results into the context of the chaperone target network and show a distinct relationship between abundance of individual chaperones and their targets. This allows us to characterise the 'throughput' of protein molecules passing through individual chaperones and their groups on a proteome-wide scale in an unstressed model eukaryote for the first time. The results demonstrate specialisations of the chaperone classes, which display different overall workloads, efficiencies and preference for the sub-cellular localisation of their targets. The novel integration of the interactome data with quantification supports re-estimates of the level of protein throughout going through molecular chaperones. Additionally, although chaperones target fewer than 40% of annotated proteins we show that they mediate the folding of the majority of protein molecules (~62% of the total protein flux in the cell), highlighting their importance.
Status: Published
Type: Journal Article
PubMed ID: 23420633
Topics addressed in this paper
Number of different genes curated to this paper: 63
Jump to Summary Chart for:
To find other papers on a gene and topic, click on the colored ball in the appropriate box.
displays other papers with information about that topic for that gene.
displays other papers in SGD that are associated with that topic. The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
To go to the Locus page for a gene, click on the gene name.
To find other papers on a gene and topic, click on the colored ball in the appropriate box.
displays other papers with information about that topic for that gene.
displays other papers in SGD that are associated with that topic. The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
To go to the Locus page for a gene, click on the gene name.
To find other papers on a gene and topic, click on the colored ball in the appropriate box.
displays other papers with information about that topic for that gene.
displays other papers in SGD that are associated with that topic. The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
To go to the Locus page for a gene, click on the gene name.