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Taddei A and Gasser SM  (2012) Structure and function in the budding yeast nucleus. Genetics 192(1):107-29

Abstract: Budding yeast, like other eukaryotes, carries its genetic information on chromosomes that are sequestered from other cellular constituents by a double membrane, which forms the nucleus. An elaborate molecular machinery forms large pores that span the double membrane and regulate the traffic of macromolecules into and out of the nucleus. In multicellular eukaryotes, an intermediate filament meshwork formed of lamin proteins bridges from pore to pore and helps the nucleus reform after mitosis. Yeast, however, lacks lamins, and the nuclear envelope is not disrupted during yeast mitosis. The mitotic spindle nucleates from the nucleoplasmic face of the spindle pole body, which is embedded in the nuclear envelope. Surprisingly, the kinetochores remain attached to short microtubules throughout interphase, influencing the position of centromeres in the interphase nucleus, and telomeres are found clustered in foci at the nuclear periphery. In addition to this chromosomal organization, the yeast nucleus is functionally compartmentalized to allow efficient gene expression, repression, RNA processing, genomic replication, and repair. The formation of functional subcompartments is achieved in the nucleus without intranuclear membranes and depends instead on sequence elements, protein-protein interactions, specific anchorage sites at the nuclear envelope or at pores, and long-range contacts between specific chromosomal loci, such as telomeres. Here we review the spatial organization of the budding yeast nucleus, the proteins involved in forming nuclear subcompartments, and evidence suggesting that the spatial organization of the nucleus is important for nuclear function.

Status: Published Type: Journal Article PubMed ID: 22964839

Topics addressed in this paper

Number of different genes curated to this paper: 75

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Topics Genes linked to topics (#1 - 10 )
ABF1 ARS607 ASF1 CDC13 CDC42 CSM1 DOA1 DOT6 EBP2 ELP4
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Topics Genes linked to topics (#11 - 20 )
ESC1 ESC2 EST1 GAL1 HEH2 HHO1 HML HMR HXK1 INO1
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Topics Genes linked to topics (#21 - 30 )
INO80 KAR9 LRS4 MEC1 MLP1 MLP2 MPS3 MRE11 MYO2 NFI1
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Topics Genes linked to topics (#31 - 40 )
NUP100 NUP133 NUP2 NUP49 NUP60 NUP84 NUR1 PHO5 POL30 POL32
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Topics Genes linked to topics (#41 - 50 )
RAD51 RAD52 RAD54 RAD55 RAD59 RAD9 RAP1 RFA1 RIF1 RIF2
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Topics Genes linked to topics (#51 - 60 )
RPA34 RPA49 RRM3 RRS1 RTT109 SAD1 SGS1 SIR1 SIR2 SIR3
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Topics Genes linked to topics (#61 - 70 )
SIR4 SLX5 SLX8 SMC5 SMC6 SNF2 SRC1 SUB2 SWR1 TEL1
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Topics Genes linked to topics (#71 - 75 )
TLC1 TOD6 ULP1 YKU70 YKU80
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