Guy MP, et al. (2012) Yeast Trm7 interacts with distinct proteins for critical modifications of the tRNAPhe anticodon loop. RNA 18(10):1921-33
Abstract: Post-transcriptional modification of the tRNA anticodon loop is critical for translation. Yeast Trm7 is required for 2'-O-methylation of C(32) and N(34) of tRNA(Phe), tRNA(Trp), and tRNA(Leu(UAA)) to form Cm(32) and Nm(34), and trm7-? mutants have severe growth and translation defects, but the reasons for these defects are not known. We show here that overproduction of tRNA(Phe) suppresses the growth defect of trm7-? mutants, suggesting that the crucial biological role of Trm7 is the modification of tRNA(Phe). We also provide in vivo and in vitro evidence that Trm7 interacts with ORF YMR259c (now named Trm732) for 2'-O-methylation of C(32), and with Rtt10 (named Trm734) for 2'-O-methylation of N(34) of substrate tRNAs and provide evidence for a complex circuitry of anticodon loop modification of tRNA(Phe), in which formation of Cm(32) and Gm(34) drives modification of m(1)G(37) (1-methylguanosine) to yW (wyebutosine). Further genetic analysis shows that the slow growth of trm7-? mutants is due to the lack of both Cm(32) and Nm(34), and the accompanying loss of yW, because trm732-? trm734-? mutants phenocopy trm7-? mutants, whereas each single mutant is healthy; nonetheless, TRM732 and TRM734 each have distinct roles, since mutations in these genes have different genetic interactions with trm1-? mutants, which lack m(2,2)G(26) in their tRNAs. We speculate that 2'-O-methylation of the anticodon loop may be important throughout eukaryotes because of the widespread conservation of Trm7, Trm732, and Trm734 proteins, and the corresponding modifications, and because the putative human TRM7 ortholog FTSJ1 is implicated in nonsyndromic X-linked mental retardation.
| Status: Published | Type: Journal Article | PubMed ID: 22912484 |
Topics addressed in this paper
Number of different genes curated to this paper: 24
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RTT10 | SUP51 | tF(GAA)B | tF(GAA)D | tF(GAA)F | tF(GAA)G | tF(GAA)H1 | tF(GAA)H2 | tF(GAA)M | tF(GAA)N | |
| Additional Literature | | |||||||||
| Alias | | |||||||||
| DNA/RNA Sequence Features | | | | | | | | | | |
| Function/Process | | |||||||||
| Genetic Interactions | | | | | | | | | | |
| Mutants/Phenotypes | | |||||||||
| Primary Literature | | | | | | | | | | |
| Protein-protein Interactions | | |||||||||
| RNA Levels and Processing | | | | | | | | | | |
| Strains/Constructs | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| tF(GAA)P1 | tF(GAA)P2 | tF(GAA)Q | tL(UAA)B1 | tL(UAA)B2 | tL(UAA)D | tL(UAA)K | tL(UAA)L | tL(UAA)N | tL(UAA)Q | |
| Additional Literature | | | | | | | | |||
| DNA/RNA Sequence Features | | | | | | | | | | |
| Genetic Interactions | | | | |||||||
| Primary Literature | | | | |||||||
| RNA Levels and Processing | | | | | | | | | | |
| Strains/Constructs | | | | |||||||
| Topics | Genes linked to topics (#21 - 24 ) | |||
|---|---|---|---|---|
| TRM1 | TRM7 | TRM732 | TYW1 | |
| Additional Literature | | |||
| Disease Gene Related | | |||
| Function/Process | | | ||
| Genetic Interactions | | | | |
| Mutants/Phenotypes | | | | |
| Non-Fungal Related Genes/Proteins | | |||
| Primary Literature | | | | |
| Protein-protein Interactions | | | ||
| Strains/Constructs | | | | |
| Substrates/Ligands/Cofactors | | | ||




