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Darby MM, et al.  (2012) The Saccharomyces cerevisiae Nrd1-Nab3 transcription termination pathway acts in opposition to Ras signaling and mediates response to nutrient depletion. Mol Cell Biol 32(10):1762-75

Abstract: The Saccharomyces cerevisiae Nrd1-Nab3 pathway directs the termination and processing of short RNA polymerase II transcripts. Despite the potential for Nrd1-Nab3 to affect the transcription of both coding and noncoding RNAs, little is known about how the Nrd1-Nab3 pathway interacts with other pathways in the cell. Here we present the results of a high-throughput synthetic lethality screen for genes that interact with NRD1 and show roles for Nrd1 in the regulation of mitochondrial abundance and cell size. We also provide genetic evidence of interactions between the Nrd1-Nab3 and Ras/protein kinase A (PKA) pathways. Whereas the Ras pathway promotes the transcription of genes involved in growth and glycolysis, the Nrd1-Nab3 pathway appears to have a novel role in the rapid suppression of some genes when cells are shifted to poor growth conditions. We report the identification of new mRNA targets of the Nrd1-Nab3 pathway that are rapidly repressed in response to glucose depletion. Glucose depletion also leads to the dephosphorylation of Nrd1 and the formation of novel nuclear speckles that contain Nrd1 and Nab3. Taken together, these results indicate a role for Nrd1-Nab3 in regulating the cellular response to nutrient availability.

Status: Published Type: Journal Article PubMed ID: 22431520

Topics addressed in this paper

Number of different genes curated to this paper: 16

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ACO1 AIM37 BCY1 CLN3 DLD3 HSP60 ILV5 IRA1 IRA2 MDM31
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Genetic Interactions blue ball blue ball blue ball blue ball
Large-scale genetic interaction yg ball
Mutants/Phenotypes blue ball blue ball blue ball blue ball
Omics yg ball
Regulation of blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#11 - 16 )
MMM1 NAB3 NRD1 PDE2 TYE7 XBP1
Additional Literature blue ball blue ball blue ball blue ball
Cellular Location blue ball
Function/Process blue ball blue ball
Genetic Interactions blue ball blue ball
Mutants/Phenotypes blue ball blue ball
Primary Literature blue ball blue ball
Protein Processing/Modification/Regulation blue ball
Protein-Nucleic Acid Interactions blue ball blue ball
Regulation of blue ball blue ball blue ball
Regulatory Role blue ball blue ball

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