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Geisler S, et al.  (2012) Decapping of long noncoding RNAs regulates inducible genes. Mol Cell 45(3):279-91

Abstract: Decapping represents a critical control point in regulating expression of protein coding genes. Here, we demonstrate that decapping also modulates expression of long noncoding RNAs (lncRNAs). Specifically, levels of >100 lncRNAs in yeast are controlled by decapping and are degraded by a pathway that occurs independent of decapping regulators. We find many lncRNAs degraded by DCP2 are expressed proximal to inducible genes. Of these, we show several genes required for galactose utilization are associated with lncRNAs that have expression patterns inversely correlated with their mRNA counterpart. Moreover, decapping of these lncRNAs is critical for rapid and robust induction of GAL gene expression. Failure to destabilize a lncRNA known to exert repressive histone modifications results in perpetuation of a repressive chromatin state that contributes to reduced plasticity of gene activation. We propose that decapping and lncRNA degradation serve a vital role in transcriptional regulation specifically at inducible genes.

Status: Published Type: Journal Article PubMed ID: 22226051

Topics addressed in this paper

Number of different genes curated to this paper: 32

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Topics Genes linked to topics (#1 - 10 )
CCR4 DCP2 DHH1 FLO11 FLO5 FLO9 FRE1 FRE5 FRE7 GAL1
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Topics Genes linked to topics (#11 - 20 )
GAL10 GAL2 GAL4 HXT10 HXT5 HXT8 LSM1 MAL11 MAL12 MAL13
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Topics Genes linked to topics (#21 - 30 )
MAL32 ORC2 PAP2 PHO5 PHO84 RAI1 RAT1 RGS2 RRP6 SKI2
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  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#31 - 32 )
TRM7 XRN1
Additional Literature blue ball
Function/Process blue ball
Mutants/Phenotypes blue ball
Primary Literature blue ball
Regulation of blue ball
Regulatory Role blue ball
Strains/Constructs blue ball
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