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Boender LG, et al.  (2011) Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures. FEMS Yeast Res 11(8):603-20

Abstract: Extremely low specific growth rates (below 0.01 h(-1) ) represent a largely unexplored area of microbial physiology. In this study, anaerobic, glucose-limited retentostats were used to analyse physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to cultivation at near-zero specific growth rates. While quiescence is typically investigated as a result of carbon starvation, cells in retentostat are fed by small, but continuous carbon and energy supply. Yeast cells cultivated near-zero specific growth rates, while metabolically active, exhibited characteristics previously associated with quiescence, including accumulation of storage polymers and an increased expression of genes involved in exit from the cell cycle into G(0). Unexpectedly, analysis of transcriptome data from retentostat and chemostat cultures showed, as specific growth rate was decreased, that quiescence-related transcriptional responses were already set in at specific growth rates above 0.025 h(-1). These observations stress the need for systematic dissection of physiological responses to slow growth, quiescence, ageing and starvation and indicate that controlled cultivation systems such as retentostats can contribute to this goal. Furthermore, cells in retentostat do not (or hardly) divide while remaining metabolically active, which emulates the physiological status of metazoan post-mitotic cells. We propose retentostat as a powerful cultivation tool to investigate chronological ageing-related processes.CI - (c) 2011 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Status: Published Type: Journal Article PubMed ID: 22093745

Topics addressed in this paper

Number of different genes curated to this paper: 72

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ACH1 ACS1 ACT1 ADH2 ALG9 ATP15 ATP17 ATP4 ATP7 CAT2
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Cell Growth and Metabolism yg ball
Genomic expression study yg ball
Omics yg ball
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Topics Genes linked to topics (#11 - 20 )
CIT2 COQ5 COQ9 COX11 COX14 COX16 COX17 COX23 COX5B COX8
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Topics Genes linked to topics (#21 - 30 )
COX9 CRC1 CTT1 CYC7 GIS1 GSY1 GSY2 HSP104 HSP12 HSP26
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Topics Genes linked to topics (#31 - 40 )
HSP82 ICL1 IMP1 IMP2 JEN1 MLS1 MSN2 MSN4 NDE2 PCK1
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Topics Genes linked to topics (#41 - 50 )
PDA1 PRB1 RAD10 RAD24 RAD27 RIM15 RNR3 SCH9 SCO2 SDH1
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Topics Genes linked to topics (#51 - 60 )
SDH2 SED1 SFC1 SIP4 SIR2 SNO1 SNO2 SNZ1 SNZ2 SOM1
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Topics Genes linked to topics (#61 - 70 )
SSA3 TAF10 TFC1 TIM17 TOM6 TPC1 UBC5 UBC6 UBI4 UPC2
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Topics Genes linked to topics (#71 - 72 )
YAT2 YFH1
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