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Niederacher G, et al.  (2011) Interplay of dynamic transcription and chromatin remodeling: lessons from yeast. Int J Mol Sci 12(8):4758-69

Abstract: Regulation of transcription involves dynamic rearrangements of chromatin structure. The budding yeast Saccharomyces cerevisiae has a variety of highly conserved factors necessary for these reconstructions. Chromatin remodelers, histone modifiers and histone chaperones directly associate to promoters and open reading frames of exposed genes and facilitate activation and repression of transcription. We compare two distinct patterns of induced transcription: Sustained transcribed genes switch to an activated state where they remain as long as the induction signal is present. In contrast, single pulsed transcribed genes show a quick and strong induction pulse resulting in high transcript levels followed by adaptation and repression to basal levels. We discuss intensively studied promoters and coding regions from both groups for their co-factor requirements during transcription. Interplay between chromatin restructuring factors and dynamic transcription is highly variable and locus dependent.

Status: Published Type: Journal Article PubMed ID: 21954323

Topics addressed in this paper

Number of different genes curated to this paper: 61

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Topics Genes linked to topics (#1 - 10 )
ACT1 ADA2 ARP4 ARP7 ARP9 CHD1 EAF1 EAF3 EAF5 EAF6
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Topics Genes linked to topics (#11 - 20 )
EAF7 EPL1 ESA1 GCN5 HFI1 HTL1 HTZ1 INO80 ISW1 LDB7
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Topics Genes linked to topics (#21 - 30 )
NGG1 NPL6 RSC1 RSC2 RSC3 RSC30 RSC4 RSC58 RSC6 RSC8
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Topics Genes linked to topics (#31 - 40 )
RSC9 RTT102 SFH1 SGF11 SGF29 SGF73 SNF11 SNF12 SNF2 SNF5
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Topics Genes linked to topics (#41 - 50 )
SNF6 SPT20 SPT3 SPT7 SPT8 STH1 SUS1 SWC4 SWI1 SWI3
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Topics Genes linked to topics (#51 - 60 )
SWP82 TAF10 TAF12 TAF14 TAF5 TAF6 TAF9 TRA1 UBP8 YAF9
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Topics Genes linked to topics (#61 )
YNG2
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