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Yu B, et al.  (2011) Spliceosomal genes in the D. discoideum genome: a comparison with those in H. sapiens, D. melanogaster, A. thaliana and S. cerevisiae. Protein Cell 2(5):395-409

Abstract: Little is known about pre-mRNA splicing in Dictyostelium discoideum although its genome has been completely sequenced. Our analysis suggests that pre-mRNA splicing plays an important role in D. discoideum gene expression as two thirds of its genes contain at least one intron. Ongoing curation of the genome to date has revealed 40 genes in D. discoideum with clear evidence of alternative splicing, supporting the existence of alternative splicing in this unicellular organism. We identified 160 candidate U2-type spliceosomal proteins and related factors in D. discoideum based on 264 known human genes involved in splicing. Spliceosomal small ribonucleoproteins (snRNPs), PRP19 complex proteins and late-acting proteins are highly conserved in D. discoideum and throughout the metazoa. In non-snRNP and hnRNP families, D. discoideum orthologs are closer to those in A. thaliana, D. melanogaster and H. sapiens than to their counterparts in S. cerevisiae. Several splicing regulators, including SR proteins and CUG-binding proteins, were found in D. discoideum, but not in yeast. Our comprehensive catalog of spliceosomal proteins provides useful information for future studies of splicing in D. discoideum where the efficient genetic and biochemical manipulation will also further our general understanding of pre-mRNA splicing.

Status: Published Type: Journal Article PubMed ID: 21667333

Topics addressed in this paper

Number of different genes curated to this paper: 61

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Topics Genes linked to topics (#1 - 10 )
BRR2 CBC2 CDC40 CDC5 CPR1 CUS1 DBP5 DIB1 HSH155 HSH49
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Topics Genes linked to topics (#11 - 20 )
HUB1 LEA1 LSM2 LSM3 LSM4 LSM5 LSM6 LSM7 LSM8 LUC7
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Topics Genes linked to topics (#21 - 30 )
MSL1 PAB1 PEP8 PRP11 PRP16 PRP18 PRP19 PRP2 PRP21 PRP22
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Topics Genes linked to topics (#31 - 40 )
PRP28 PRP3 PRP31 PRP38 PRP39 PRP4 PRP40 PRP43 PRP46 PRP5
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Topics Genes linked to topics (#41 - 50 )
PRP6 PRP9 RDS3 RRP6 RSE1 SAD1 SMB1 SMC1 SMD1 SMD2
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Topics Genes linked to topics (#51 - 60 )
SMD3 SME1 SMX2 SMX3 SNP1 SNU114 SNU13 SNU66 STO1 THO2
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Topics Genes linked to topics (#61 )
YHC1
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