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Hoang ML, et al.  (2010) Competitive repair by naturally dispersed repetitive DNA during non-allelic homologous recombination. PLoS Genet 6(12):e1001228

Abstract: Genome rearrangements often result from non-allelic homologous recombination (NAHR) between repetitive DNA elements dispersed throughout the genome. Here we systematically analyze NAHR between Ty retrotransposons using a genome-wide approach that exploits unique features of Saccharomyces cerevisiae purebred and Saccharomyces cerevisiae/Saccharomyces bayanus hybrid diploids. We find that DNA double-strand breaks (DSBs) induce NAHR-dependent rearrangements using Ty elements located 12 to 48 kilobases distal to the break site. This break-distal recombination (BDR) occurs frequently, even when allelic recombination can repair the break using the homolog. Robust BDR-dependent NAHR demonstrates that sequences very distal to DSBs can effectively compete with proximal sequences for repair of the break. In addition, our analysis of NAHR partner choice between Ty repeats shows that intrachromosomal Ty partners are preferred despite the abundance of potential interchromosomal Ty partners that share higher sequence identity. This competitive advantage of intrachromosomal Tys results from the relative efficiencies of different NAHR repair pathways. Finally, NAHR generates deleterious rearrangements more frequently when DSBs occur outside rather than within a Ty repeat. These findings yield insights into mechanisms of repeat-mediated genome rearrangements associated with evolution and cancer.

Status: Published Type: Journal Article | Research Support, N.I.H., Extramural | Research Support, Non-U.S. Gov't PubMed ID: 21151956

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
YALCdelta2 YALWdelta1 YARCdelta3 YARCdelta4 YARCdelta5 YARCdelta8 YARCTy1-1 YARWdelta6 YARWdelta7 YBLCdelta7
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cell Growth and Metabolism yg ball
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YBLWdelta1 YBLWdelta10 YBLWdelta2 YBLWdelta3 YBLWdelta4 YBLWdelta5 YBLWdelta6 YBLWdelta8 YBLWdelta9 YBLWTy1-1
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Topics Genes linked to topics (#21 - 30 )
YBLWTy2-1 YBRCdelta11 YBRCdelta14 YBRCdelta19 YBRWdelta12 YBRWdelta13 YBRWdelta15 YBRWdelta16 YBRWdelta17 YBRWdelta18
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Topics Genes linked to topics (#31 - 40 )
YBRWTy1-2 YCLCdelta1 YCLWdelta15 YCLWdelta2a YCLWdelta2b YCLWdelta3 YCLWdelta4 YCLWdelta5 YCLWTy2-1 YCLWTy5-1
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Topics Genes linked to topics (#41 - 50 )
YCRCdelta14 YCRCdelta6 YCRCdelta7 YCRWdelta10 YCRWdelta11 YCRWdelta12 YCRWdelta13 YCRWdelta8 YCRWdelta9 YDLCdelta1
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Topics Genes linked to topics (#51 - 60 )
YDRCdelta2 YDRCdelta21 YDRCdelta22 YDRCdelta3 YDRCdelta4 YDRCdelta5 YDRCdelta6a YDRCdelta6b YDRCdelta7 YDRCdelta8
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Topics Genes linked to topics (#61 - 70 )
YDRCdelta9 YDRCTy1-1 YDRCTy1-2 YDRCTy1-3 YDRCTy2-1 YDRWdelta10 YDRWdelta11 YDRWdelta12 YDRWdelta13 YDRWdelta14
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Topics Genes linked to topics (#71 - 80 )
YDRWdelta19 YDRWdelta20 YDRWdelta23 YDRWdelta24 YDRWdelta25 YDRWdelta26 YDRWdelta27 YDRWdelta28 YDRWdelta29 YDRWdelta30
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Topics Genes linked to topics (#81 - 90 )
YDRWdelta31 YDRWdelta7 YDRWTy1-4 YDRWTy1-5 YDRWTy2-2 YDRWTy2-3 YELCdelta3 YELCdelta4 YELWdelta1 YELWdelta2
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Topics Genes linked to topics (#91 - 100 )
YELWdelta5 YELWdelta6 YERCdelta10 YERCdelta14 YERCdelta15 YERCdelta16 YERCdelta19 YERCdelta20 YERCdelta23 YERCdelta24
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#101 - 110 )
YERCdelta26 YERCdelta8 YERCTy1-1 YERCTy1-2 YERWdelta11 YERWdelta12 YERWdelta13 YERWdelta17 YERWdelta18 YERWdelta21
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Topics Genes linked to topics (#111 - 120 )
YERWdelta22 YERWdelta25 YERWdelta7 YERWdelta9 YFLCdelta6 YFLWdelta1 YFLWdelta2 YFLWdelta3 YFLWdelta4 YFLWdelta5
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Topics Genes linked to topics (#121 - 130 )
YFLWTy2-1 YFRCdelta8 YFRCdelta9 YFRWdelta10 YFRWdelta7 YGLCdelta1 YGLCdelta5 YGLWdelta10 YGLWdelta2 YGLWdelta3
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Topics Genes linked to topics (#131 - 140 )
YGLWdelta4 YGLWdelta6 YGLWdelta7 YGLWdelta8 YGLWdelta9 YGRCdelta12 YGRCdelta15 YGRCdelta16 YGRCdelta17 YGRCdelta18
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#141 - 150 )
YGRCdelta20 YGRCdelta25 YGRCdelta29 YGRCdelta30 YGRCTy1-2 YGRCTy1-3 YGRCTy2-1 YGRWdelta11 YGRWdelta13 YGRWdelta14
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#151 - 160 )
YGRWdelta19 YGRWdelta21 YGRWdelta22 YGRWdelta23 YGRWdelta24 YGRWdelta26 YGRWdelta27 YGRWdelta28 YGRWdelta31 YGRWdelta32
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#161 - 170 )
YGRWTy1-1 YGRWTy2-2 YHLCdelta1 YHLWdelta2 YHRCdelta10 YHRCdelta11 YHRCdelta12 YHRCdelta14 YHRCdelta15 YHRCdelta16
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#171 - 180 )
YHRCdelta3 YHRCdelta4 YHRCdelta5 YHRCdelta6 YHRCdelta8 YHRCTy1-1 YHRWdelta13 YHRWdelta7 YHRWdelta9 YILCdelta1
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YILCdelta3 YILCdelta5 YILWdelta2 YILWdelta4 YIRCdelta6 YJLCdelta3 YJLCdelta4 YJLCdelta5 YJLCdelta6 YJLCdelta7
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Topics Genes linked to topics (#191 - 200 )
YJLWdelta1 YJLWdelta10 YJLWdelta2 YJLWdelta8 YJLWdelta9 YJRCdelta15 YJRCdelta16 YJRCdelta19 YJRWdelta11 YJRWdelta12
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#201 - 210 )
YJRWdelta13 YJRWdelta14 YJRWdelta17 YJRWdelta18 YJRWdelta20 YJRWTy1-1 YJRWTy1-2 YKLCdelta2 YKLCdelta4 YKLCdelta5
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#211 - 220 )
YKLCdelta6 YKLWdelta1 YKLWdelta3 YKLWdelta7 YKRCdelta11 YKRCdelta12 YKRCdelta8 YKRCdelta9 YKRWdelta10 YLLCdelta1
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#221 - 230 )
YLRCdelta16 YLRCdelta18 YLRCdelta19 YLRCdelta2 YLRCdelta21 YLRCdelta25 YLRCdelta26 YLRCdelta27 YLRCdelta3 YLRCdelta5
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#231 - 240 )
YLRCdelta7 YLRCdelta8 YLRCdelta9 YLRCTy1-1 YLRCTy2-2 YLRWdelta10 YLRWdelta11 YLRWdelta12 YLRWdelta13 YLRWdelta14
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#241 - 250 )
YLRWdelta15 YLRWdelta17 YLRWdelta20 YLRWdelta22 YLRWdelta23 YLRWdelta24 YLRWdelta4 YLRWdelta6 YLRWTy1-2 YLRWTy1-3
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#251 - 260 )
YLRWTy2-1 YMLCdelta1 YMLCdelta2 YMLWdelta3 YMLWdelta4 YMLWdelta5 YMLWdelta6 YMLWTy1-1 YMLWTy1-2 YMRCdelta10
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#261 - 270 )
YMRCdelta11 YMRCdelta13 YMRCdelta14 YMRCdelta18 YMRCdelta7 YMRCdelta8 YMRCdelta9 YMRCTy1-3 YMRCTy1-4 YMRWdelta12
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#271 - 280 )
YMRWdelta15 YMRWdelta16 YMRWdelta17 YMRWdelta19 YMRWdelta20 YMRWdelta21 YNLCdelta1 YNLCdelta2 YNLCdelta5 YNLCdelta6
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Topics Genes linked to topics (#281 - 290 )
YNLCTy1-1 YNLCTy2-1 YNLWdelta3 YNLWdelta4 YNLWTy1-2 YNRCdelta7 YNRCdelta8 YNRCdelta9 YOLCdelta1 YOLCdelta2
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#291 - 300 )
YOLCdelta3 YOLCdelta7 YOLCdelta8 YOLWdelta4 YOLWdelta5 YOLWdelta6 YOLWTy1-1 YORCdelta11 YORCdelta15 YORCdelta18
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Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#301 - 310 )
YORCdelta20 YORCdelta21 YORCdelta25 YORCdelta9 YORCTy2-1 YORWdelta10 YORWdelta12 YORWdelta13 YORWdelta14 YORWdelta16
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Other Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#311 - 320 )
YORWdelta17 YORWdelta19 YORWdelta22 YORWdelta23 YORWdelta24 YORWTy1-2 YORWTy2-2 YPLCdelta1 YPLCdelta10 YPLWdelta11
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Topics Genes linked to topics (#321 - 330 )
YPLWdelta2 YPLWdelta3 YPLWdelta4 YPLWdelta5 YPLWdelta6 YPLWdelta7 YPLWdelta8 YPLWdelta9 YPLWTy1-1 YPRCdelta13
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YPRCdelta15 YPRCdelta18 YPRCdelta19 YPRCdelta22 YPRCdelta23 YPRCdelta24 YPRCTy1-2 YPRCTy1-4 YPRWdelta12 YPRWdelta14
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Topics Genes linked to topics (#341 - 345 )
YPRWdelta16 YPRWdelta17 YPRWdelta20 YPRWdelta21 YPRWTy1-3
Additional Literature blue ball blue ball blue ball blue ball blue ball
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