Dohm JC, et al. (2006) Horizontal gene transfer in aminoacyl-tRNA synthetases including leucine-specific subtypes. J Mol Evol 63(4):437-47
Abstract: Aminoacyl-tRNA synthetases catalyze a fundamental reaction for the flow of genetic information from RNA to protein. Their presence in all organisms known today highlights their important role in the early evolution of life. We investigated the evolutionary history of aminoacyl-tRNA synthetases on the basis of sequence data from more than 200 Archaea, Bacteria, and Eukaryota. Phylogenetic profiles are in agreement with previous observations that many genes for aminoacyl-tRNA synthetases were transferred horizontally between species from all domains of life. We extended these findings by a detailed analysis of the history of leucyl-tRNA synthetases. Thereby, we identified a previously undetected case of horizontal gene transfer from Bacteria to Archaea based on phylogenetic profiles, trees, and networks. This means that, finally, the last subfamily of aminoacyl-tRNA synthetases has lost its exceptional position as the sole subfamily that is devoid of horizontal gene transfer. Furthermore, the leucyl-tRNA synthetase phylogenetic tree suggests a dichotomy of the archaeal/eukaryotic-cytosolic and bacterial/eukaryotic-mitochondrial proteins. We argue that the traditional division of life into Prokaryota (non-chimeric) and Eukaryota (chimeric) is favorable compared to Woese's trichotomy into Archaea/Bacteria/Eukaryota.
| Status: Published | Type: Journal Article | PubMed ID: 16955236 |
Topics addressed in this paper
Number of different genes curated to this paper: 36
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#1 - 10 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| AIM10 | ALA1 | CDC60 | DED81 | DIA4 | DPS1 | FRS1 | FRS2 | GLN4 | GRS1 | |
| Additional Literature | | | | | | | | | | |
| Evolution | | | | | | | | | | |
| Fungal Related Genes/Proteins | | | | | | | | | | |
| Non-Fungal Related Genes/Proteins | | | | | | | | | | |
| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| GRS2 | GUS1 | HTS1 | ILS1 | ISM1 | KRS1 | MES1 | MSD1 | MSE1 | MSF1 | |
| Additional Literature | | | | | | | | | | |
| Evolution | | | | | | | | | | |
| Fungal Related Genes/Proteins | | | | | | | | | | |
| Non-Fungal Related Genes/Proteins | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| MSK1 | MSM1 | MSR1 | MST1 | MSW1 | MSY1 | NAM2 | SES1 | SLM5 | THS1 | |
| Additional Literature | | | | | | | | | | |
| Evolution | | | | | | | | | | |
| Fungal Related Genes/Proteins | | | | | | | | | | |
| Non-Fungal Related Genes/Proteins | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
- To go to the Locus page for a gene, click on the gene name.
| Topics | Genes linked to topics (#31 - 36 ) | |||||
|---|---|---|---|---|---|---|
| TYS1 | VAS1 | WRS1 | YDR341C | YHR020W | YNL247W | |
| Additional Literature | | | | | | |
| Evolution | | | | | | |
| Fungal Related Genes/Proteins | | | | | | |
| Non-Fungal Related Genes/Proteins | | | | | | |




