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Poorey K, et al.  (2010) RNA synthesis precision is regulated by preinitiation complex turnover. Genome Res 20(12):1679-88

Abstract: TATA-binding protein (TBP) nucleates the assembly of the transcription preinitiation complex (PIC), and although TBP can bind promoters with high stability in vitro, recent results establish that virtually the entire TBP population is highly dynamic in yeast nuclei in vivo. This dynamic behavior is surprising in light of models which posit that a stable TBP-containing scaffold facilitates transcription reinitiation at active promoters. The dynamic behavior of TBP is a consequence of the enzymatic activity of the essential Snf2/Swi2 ATPase Mot1, suggesting that ensuring a highly mobile TBP population is critical for transcriptional regulation on a global scale. Here high-resolution tiling arrays were used to define how perturbed TBP dynamics impact the precision of RNA synthesis in Saccharomyces cerevisiae. We find that Mot1 plays a broad role in establishing the precision and efficiency of RNA synthesis: in mot1-42 cells, RNA length changes were observed for 713 genes, about twice the number observed in set2Delta cells, which display a previously reported propensity for spurious initiation within open reading frames. Loss of Mot1 led to both aberrant transcription initiation and termination, with prematurely terminated transcripts representing the largest class of events. Genetic and genomic analyses support the conclusion that these effects on RNA length are mechanistically tied to dynamic TBP occupancies at certain types of promoters. These results suggest a new model whereby dynamic disassembly of the PIC can influence productive RNA synthesis.

Status: Published Type: Journal Article PubMed ID: 20855454

Topics addressed in this paper

Number of different genes curated to this paper: 20

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
MOT1 PAN1 PCA1 RPB10 RPB11 RPB2 RPB3 RPB4 RPB5 RPB7
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Topics Genes linked to topics (#11 - 20 )
RPB8 RPB9 RPC10 RPO21 RPO26 SET2 SPT15 STE11 SUA7 THI2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Cellular Location blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Mutants/Phenotypes blue ball
Regulatory Role blue ball
Transcription blue ball blue ball

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