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Zhang H, et al.  (2008) Dissection of coactivator requirement at RNR3 reveals unexpected contributions from TFIID and SAGA. J Biol Chem 283(41):27360-8

Abstract: The gene encoding ribonucleotide reductase 3 (RNR3) is strongly induced in response to DNA damage. Its expression is strictly dependent upon the TAF(II) subunits of TFIID, which are required for the recruitment of SWI/SNF and nucleosome remodeling. However, full activation of RNR3 also requires GCN5, the catalytic subunit of the SAGA histone acetyltransferase complex. Thus, RNR3 is dependent upon both TFIID and SAGA, two complexes that deliver TATA-binding protein (TBP) to promoters. Furthermore, unlike the majority of TFIID-dominated genes, RNR3 contains a consensus TATA-box, a feature of SAGA-regulated core promoters. Although a large fraction of the genome can be characterized as either TFIID- or SAGA-dominant, it is expected that many genes utilize both. The mechanism of activation and the relative contributions of SAGA and TFIID at genes regulated by both complexes have not been examined. Here we delineated the role of SAGA in the regulation of RNR3 and contrast it to that of TFIID. We find that SAGA components fulfill distinct functions in the regulation of RNR3. The core promoter of RNR3 is SAGA-dependent, and we provide evidence that SAGA, not TAF(II)s within TFIID, are largely responsible for TBP recruitment. This taken together with our previous work provides evidence that SAGA recruits TBP, whereas TFIID mediates chromatin remodeling. Thus, we described an unexpected shift in the division of labor between these two complexes and provide the first characterization of a gene that requires both SAGA and TFIID.

Status: Published Type: Journal Article | Research Support, N.I.H., Extramural PubMed ID: 18682387

Topics addressed in this paper

Number of different genes curated to this paper: 23

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Topics Genes linked to topics (#1 - 10 )
CYC8 GCN5 RFX1 RNR3 RPB10 RPB11 RPB2 RPB3 RPB4 RPB5
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball
Genetic Interactions blue ball
Mutants/Phenotypes blue ball
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Protein-Nucleic Acid Interactions blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Regulation of blue ball
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Topics Genes linked to topics (#11 - 20 )
RPB7 RPB8 RPB9 RPO21 RPO26 RPS5 SNF2 SPT15 SPT3 SPT7
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Function/Process blue ball blue ball
Genetic Interactions blue ball
Mutants/Phenotypes blue ball blue ball blue ball
Primary Literature blue ball
Protein-Nucleic Acid Interactions blue ball blue ball blue ball blue ball blue ball blue ball
Regulation of blue ball
Transcription blue ball

Topics Genes linked to topics (#21 - 23 )
SPT8 TAF1 TUP1
Additional Literature blue ball blue ball blue ball
Mutants/Phenotypes blue ball blue ball
Protein-Nucleic Acid Interactions blue ball blue ball

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