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McFarlane RJ and Whitehall SK  (2009) tRNA genes in eukaryotic genome organization and reorganization. Cell Cycle 8(19):3102-6

Abstract: The primary function of tRNA genes is to provide the templates for the transcription of essential tRNA molecules. However, there is now evidence that these dispersed repetitive elements have the potential to mediate the spatial and functional organization of the genome and to drive genome change and evolution. Indeed, tRNA genes and related Pol III promoter elements can occupy distinct subnuclear positions and also provide barriers which functionally separate domains of chromatin. Furthermore, tRNA genes can also represent barriers to DNA replication fork progression and accordingly, tRNA genes can contribute to the formation of genomic fragile sites and have been implicated in genome evolution. Here we give insight into our current understanding of these "extra transcriptional" functions of tRNA genes and discuss how these functions may impact upon genome regulation and evolution.

Status: Published Type: Journal Article PubMed ID: 19738425

Topics addressed in this paper

Number of different genes curated to this paper: 241

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Topics Genes linked to topics (#1 - 10 )
BDP1 BRF1 EMT1 EMT2 EMT3 EMT4 EMT5 ETC1 ETC2 ETC3
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Topics Genes linked to topics (#11 - 20 )
ETC4 ETC6 ETC7 ETC8 HML HMR IMT1 IMT2 IMT3 IMT4
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Topics Genes linked to topics (#21 - 30 )
ISW2 MEC1 RDN1 RET1 RNA170 RPB10 RPB5 RPB8 RPC10 RPC11
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Topics Genes linked to topics (#31 - 40 )
RPC17 RPC19 RPC25 RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO26
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Topics Genes linked to topics (#41 - 50 )
RPO31 RRM3 SMC2 SMC4 SMC5 SMC6 SOE1 SPT15 SUF1 SUF10
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Topics Genes linked to topics (#51 - 60 )
SUF11 SUF16 SUF17 SUF2 SUF20 SUF3 SUF4 SUF5 SUF6 SUF7
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Topics Genes linked to topics (#61 - 70 )
SUF8 SUF9 SUP11 SUP16 SUP17 SUP19 SUP2 SUP3 SUP4 SUP5
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Topics Genes linked to topics (#71 - 80 )
SUP51 SUP53 SUP54 SUP56 SUP6 SUP61 SUP7 SUP8 SWI1 tE(CUC)D
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Topics Genes linked to topics (#81 - 90 )
tE(CUC)I tE(UUC)E2 tE(UUC)E3 tE(UUC)G2 tE(UUC)G3 tE(UUC)I tE(UUC)J tE(UUC)K tE(UUC)L tE(UUC)M
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Topics Genes linked to topics (#91 - 100 )
tE(UUC)P tF(GAA)B tF(GAA)D tF(GAA)F tF(GAA)G tF(GAA)H1 tF(GAA)H2 tF(GAA)M tF(GAA)N tF(GAA)P1
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Topics Genes linked to topics (#101 - 110 )
tF(GAA)P2 TFC1 TFC3 TFC4 TFC6 TFC7 TFC8 tG(GCC)B tG(GCC)D1 tG(GCC)D2
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Topics Genes linked to topics (#111 - 120 )
tG(GCC)E tG(GCC)F2 tG(GCC)G1 tG(GCC)G2 tG(GCC)J1 tG(GCC)J2 tG(GCC)M tG(GCC)O1 tG(GCC)P1 tG(GCC)P2
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Topics Genes linked to topics (#121 - 130 )
tH(GUG)E1 tH(GUG)E2 tH(GUG)G1 tH(GUG)G2 tH(GUG)H tH(GUG)K tH(GUG)M tI(AAU)B tI(AAU)D tI(AAU)E1
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Topics Genes linked to topics (#131 - 140 )
tI(AAU)E2 tI(AAU)G tI(AAU)I1 tI(AAU)I2 tI(AAU)L1 tI(AAU)L2 tI(AAU)N1 tI(AAU)N2 tI(AAU)P1 tI(AAU)P2
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Topics Genes linked to topics (#141 - 150 )
tI(UAU)D tI(UAU)L tK(CUU)C tK(CUU)D1 tK(CUU)D2 tK(CUU)E1 tK(CUU)E2 tK(CUU)F tK(CUU)G1 tK(CUU)G2
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Topics Genes linked to topics (#151 - 160 )
tK(CUU)G3 tK(CUU)I tK(CUU)J tK(CUU)K tK(CUU)M tK(CUU)P tK(UUU)D tK(UUU)G1 tK(UUU)G2 tK(UUU)K
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Topics Genes linked to topics (#161 - 170 )
tK(UUU)L tK(UUU)O tK(UUU)P tL(CAA)D tL(CAA)G1 tL(CAA)G3 tL(CAA)K tL(CAA)L tL(CAA)M tL(CAA)N
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Topics Genes linked to topics (#171 - 180 )
tL(GAG)G tL(UAA)B1 tL(UAA)B2 tL(UAA)D tL(UAA)K tL(UAA)L tL(UAA)N tL(UAG)J tL(UAG)L1 tL(UAG)L2
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Topics Genes linked to topics (#181 - 190 )
tM(CAU)C tP(UGG)L tP(UGG)N1 tP(UGG)N2 tP(UGG)O1 tP(UGG)O3 TRN1 TRT2 tS(AGA)A tS(AGA)B
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Topics Genes linked to topics (#191 - 200 )
tS(AGA)D1 tS(AGA)D2 tS(AGA)D3 tS(AGA)E tS(AGA)G tS(AGA)H tS(AGA)J tS(AGA)L tS(AGA)M tS(GCU)F
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Topics Genes linked to topics (#201 - 210 )
tS(GCU)O tT(AGU)B tT(AGU)C tT(AGU)D tT(AGU)H tT(AGU)I1 tT(AGU)I2 tT(AGU)J tT(AGU)N1 tT(AGU)N2
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Topics Genes linked to topics (#211 - 220 )
tT(AGU)O1 tT(AGU)O2 tT(UGU)G1 tT(UGU)G2 tT(UGU)H tT(UGU)P tV(AAC)E1 tV(AAC)E2 tV(AAC)G1 tV(AAC)G2
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Topics Genes linked to topics (#221 - 230 )
tV(AAC)G3 tV(AAC)H tV(AAC)J tV(AAC)K1 tV(AAC)K2 tV(AAC)L tV(AAC)M1 tV(AAC)M2 tV(AAC)M3 tV(AAC)O
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Topics Genes linked to topics (#231 - 240 )
tV(CAC)D tV(CAC)H tV(UAC)B tV(UAC)D tW(CCA)G1 tW(CCA)G2 tW(CCA)J tW(CCA)K tW(CCA)M tW(CCA)P
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Topics Genes linked to topics (#241 )
tX(XXX)L
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