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Stanley D, et al.  (2010) Retrotransposon expression in ethanol-stressed Saccharomyces cerevisiae. Appl Microbiol Biotechnol 87(4):1447-54

Abstract: There are five retrotransposon families in Saccharomyces cerevisiae, three (Ty1, Ty2, and Ty3) of which are known to be transcriptionally active. Early investigations reported yeast retrotransposons to be stress-induced; however, microarray-based studies do not report retrotransposition-related Gene Ontology (GO) categories in the ethanol stress response of S. cerevisiae. In this study, microarray technology was used to investigate the ethanol stress response of S. cerevisiae W303-1A, and the highest stress-induced GO categories, based on z-score, were found to be retrotransposition-related, namely, Retrotransposition Nucleocapsid and Transposition, RNA-Mediated. Further investigation, involving reanalysis of previously published results on the stress response of S. cerevisiae, identified the absence of annotation for retrotransposon genes and associated GO categories and their omission during the printing of spotted arrays as two reasons why these categories in previous gene expression studies on the ethanol stress response of yeast were not reported.

Status: Published Type: Journal Article PubMed ID: 20393705

Topics addressed in this paper

Number of different genes curated to this paper: 34

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
YBL005W-A YBL005W-B YBR012W-A YBR012W-B YCL019W YCL020W YDR034C-D YDR098C-A YDR098C-B YDR170W-A
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Computational analysis yg ball
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Topics Genes linked to topics (#11 - 20 )
YDR210W-A YDR261C-C YDR261W-A YDR261W-B YER137C-A YER138C YER160C YFL002W-A YFL002W-B YGR161C-C
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#21 - 30 )
YGR161W-A YGR161W-B YHR214C-B YJR029W YLR227W-B YML045W YMR045C YMR050C YMR051C YNL054W-B
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Function/Process blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#31 - 34 )
YNL284C-B YOL103W-B YPL257W-A YPR158C-D
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