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Deluna A, et al.  (2010) Need-based up-regulation of protein levels in response to deletion of their duplicate genes. PLoS Biol 8(3):e1000347

Abstract: Many duplicate genes maintain functional overlap despite divergence over long evolutionary time scales. Deleting one member of a paralogous pair often has no phenotypic effect, unless its paralog is also deleted. It has been suggested that this functional compensation might be mediated by active up-regulation of expression of a gene in response to deletion of its paralog. However, it is not clear how prevalent such paralog responsiveness is, nor whether it is hardwired or dependent on feedback from environmental conditions. Here, we address these questions at the genomic scale using high-throughput flow cytometry of single-cell protein levels in differentially labeled cocultures of wild-type and paralog-knockout Saccharomyces cerevisiae strains. We find that only a modest fraction of proteins (22 out of 202) show significant up-regulation to deletion of their duplicate genes. However, these paralog-responsive proteins match almost exclusively duplicate pairs whose overlapping function is required for growth. Moreover, media conditions that add or remove requirements for the function of a duplicate gene pair specifically eliminate or create paralog responsiveness. Together, our results suggest that paralog responsiveness in yeast is need-based: it appears only in conditions in which the gene function is required. Physiologically, such need-based responsiveness could provide an adaptive mechanism for compensation of genetic, environmental, or stochastic perturbations in protein abundance.

Status: Published Type: Journal Article PubMed ID: 20361019

Topics addressed in this paper

Number of different genes curated to this paper: 38

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ADE17 APE2 ASN2 BMH1 COT1 CPT1 CUE4 DOT6 EMI2 FPR3
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Evolution yg ball
Large-scale phenotype analysis yg ball
Large-scale protein detection yg ball
Omics yg ball
Protein Processing/Modification/Regulation blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#11 - 20 )
FPR4 GGA1 GIN4 GPD2 HOR2 HSC82 HSP82 HTB1 HXK1 IMD3
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Protein Processing/Modification/Regulation blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#21 - 30 )
IMD4 LYS20 LYS21 MMF1 NUP157 PGM2 PPH22 PYC2 RGA2 RHR2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Protein Processing/Modification/Regulation blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Transcription blue ball blue ball blue ball blue ball blue ball
Jump to Summary Chart for:
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  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#31 - 38 )
SAM1 SAM2 SEC14 SER33 SRO7 SWI5 URA7 VHS2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Protein Processing/Modification/Regulation blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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