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Li Y and Zhou H  (2009) tRNAs as regulators in gene expression. Sci China C Life Sci 52(3):245-52

Abstract: Transfer RNAs (tRNAs) hold a central place in protein synthesis by interpreting the genetic information stored in DNA into the amino acid sequence of protein, thus functioning as "adaptor" molecules. In recent years, however, various studies have shown that tRNAs have additional functions beyond participating in protein synthesis. When suffering from certain nutritional stresses, tRNAs change the level of aminoacylation to became uncharged, and these uncharged tRNAs act as effector molecules to regulate global gene expression, so that the stressed organism copes with the adverse environmental stresses. In budding yeast and certain mammalian cells, the retrograde movement of mature tRNAs from cytoplasm to nucleus serves as a mechanism for the surveillance system within the nucleus to continue monitoring the integrity of tRNAs. On the other hand, this retrograde action effectively reduces the global protein synthesis level under conditions of nutritional starvation. Quite recently, various publications have shown that tRNAs are not stable molecules in an absolute sense. Under certain physiological or environmental stresses, they are specifically cleaved into fragments of different lengths in the anticodon loop or anticodon left arm. These cleavages are not a meaningless random degradation phenomenon. Instead, a novel class of signal molecules such as tRNA halves or sitRNAs may be produced, which are closely correlated with the modulation of global gene expression. Investigation of the regulatory functions of tRNAs is a frontier, which seeks to reveal the structural and functional diversity of tRNAs as well as their vital functions during the expression of genetic information.

Status: Published Type: Journal Article PubMed ID: 19294349

Topics addressed in this paper

Number of different genes curated to this paper: 299

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Topics Genes linked to topics (#1 - 10 )
CDC65 EMT1 EMT2 EMT3 EMT4 EMT5 HSX1 IMT1 IMT2 IMT3
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Topics Genes linked to topics (#11 - 20 )
IMT4 SOE1 SUF1 SUF10 SUF11 SUF16 SUF17 SUF2 SUF20 SUF3
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Topics Genes linked to topics (#21 - 30 )
SUF4 SUF5 SUF6 SUF7 SUF8 SUF9 SUP11 SUP16 SUP17 SUP19
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Topics Genes linked to topics (#31 - 40 )
SUP2 SUP3 SUP4 SUP5 SUP51 SUP53 SUP54 SUP56 SUP6 SUP61
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Topics Genes linked to topics (#41 - 50 )
SUP7 SUP8 tA(AGC)D tA(AGC)F tA(AGC)G tA(AGC)H tA(AGC)J tA(AGC)K1 tA(AGC)K2 tA(AGC)L
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Topics Genes linked to topics (#51 - 60 )
tA(AGC)M1 tA(AGC)M2 tA(AGC)P tA(UGC)A tA(UGC)E tA(UGC)G tA(UGC)L tA(UGC)O tA(UGC)Q tC(GCA)B
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Topics Genes linked to topics (#61 - 70 )
tC(GCA)G tC(GCA)P1 tC(GCA)P2 tC(GCA)Q tD(GUC)B tD(GUC)D tD(GUC)G1 tD(GUC)G2 tD(GUC)I1 tD(GUC)I2
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Topics Genes linked to topics (#71 - 80 )
tD(GUC)J1 tD(GUC)J2 tD(GUC)J3 tD(GUC)J4 tD(GUC)K tD(GUC)L1 tD(GUC)L2 tD(GUC)M tD(GUC)N tD(GUC)O
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Topics Genes linked to topics (#81 - 90 )
tD(GUC)Q tE(CUC)D tE(CUC)I tE(UUC)B tE(UUC)C tE(UUC)E1 tE(UUC)E2 tE(UUC)E3 tE(UUC)G2 tE(UUC)G3
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Topics Genes linked to topics (#91 - 100 )
tE(UUC)I tE(UUC)J tE(UUC)K tE(UUC)L tE(UUC)M tE(UUC)P tE(UUC)Q tF(GAA)B tF(GAA)D tF(GAA)F
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Topics Genes linked to topics (#101 - 110 )
tF(GAA)G tF(GAA)H1 tF(GAA)H2 tF(GAA)M tF(GAA)N tF(GAA)P1 tF(GAA)P2 tF(GAA)Q tG(GCC)B tG(GCC)D1
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Topics Genes linked to topics (#111 - 120 )
tG(GCC)D2 tG(GCC)E tG(GCC)F2 tG(GCC)G1 tG(GCC)G2 tG(GCC)J1 tG(GCC)J2 tG(GCC)M tG(GCC)O1 tG(GCC)P1
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Topics Genes linked to topics (#121 - 130 )
tG(GCC)P2 tG(UCC)Q tH(GUG)E1 tH(GUG)E2 tH(GUG)G1 tH(GUG)G2 tH(GUG)H tH(GUG)K tH(GUG)M tH(GUG)Q
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Topics Genes linked to topics (#131 - 140 )
tI(AAU)B tI(AAU)D tI(AAU)E1 tI(AAU)E2 tI(AAU)G tI(AAU)I1 tI(AAU)I2 tI(AAU)L1 tI(AAU)L2 tI(AAU)N1
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Topics Genes linked to topics (#141 - 150 )
tI(AAU)N2 tI(AAU)P1 tI(AAU)P2 tI(GAU)Q tI(UAU)D tI(UAU)L tK(CUU)C tK(CUU)D1 tK(CUU)D2 tK(CUU)E1
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Topics Genes linked to topics (#151 - 160 )
tK(CUU)E2 tK(CUU)F tK(CUU)G1 tK(CUU)G2 tK(CUU)G3 tK(CUU)I tK(CUU)J tK(CUU)K tK(CUU)M tK(CUU)P
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Topics Genes linked to topics (#161 - 170 )
tK(UUU)D tK(UUU)G1 tK(UUU)G2 tK(UUU)K tK(UUU)L tK(UUU)O tK(UUU)P tK(UUU)Q tL(CAA)D tL(CAA)G1
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Topics Genes linked to topics (#171 - 180 )
tL(CAA)G3 tL(CAA)K tL(CAA)L tL(CAA)M tL(CAA)N tL(GAG)G tL(UAA)B1 tL(UAA)B2 tL(UAA)D tL(UAA)K
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Topics Genes linked to topics (#181 - 190 )
tL(UAA)L tL(UAA)N tL(UAA)Q tL(UAG)J tL(UAG)L1 tL(UAG)L2 tM(CAU)C tM(CAU)Q1 tM(CAU)Q2 tN(GUU)C
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Topics Genes linked to topics (#191 - 200 )
tN(GUU)F tN(GUU)G tN(GUU)K tN(GUU)L tN(GUU)N1 tN(GUU)N2 tN(GUU)O1 tN(GUU)O2 tN(GUU)P tN(GUU)Q
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Topics Genes linked to topics (#201 - 210 )
tP(UGG)L tP(UGG)N1 tP(UGG)N2 tP(UGG)O1 tP(UGG)O3 tP(UGG)Q tQ(UUG)B tQ(UUG)C tQ(UUG)D1 tQ(UUG)D2
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Topics Genes linked to topics (#211 - 220 )
tQ(UUG)D3 tQ(UUG)E1 tQ(UUG)E2 tQ(UUG)H tQ(UUG)L tQ(UUG)Q tR(ACG)D tR(ACG)E tR(ACG)J tR(ACG)K
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Topics Genes linked to topics (#221 - 230 )
tR(ACG)L tR(ACG)O tR(ACG)Q2 tR(UCU)B tR(UCU)D tR(UCU)E tR(UCU)G1 tR(UCU)G2 tR(UCU)G3 tR(UCU)J1
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Topics Genes linked to topics (#231 - 240 )
tR(UCU)J2 tR(UCU)K tR(UCU)M1 tR(UCU)M2 tR(UCU)Q1 TRN1 TRR4 TRT2 tS(AGA)A tS(AGA)B
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Topics Genes linked to topics (#241 - 250 )
tS(AGA)D1 tS(AGA)D2 tS(AGA)D3 tS(AGA)E tS(AGA)G tS(AGA)H tS(AGA)J tS(AGA)L tS(AGA)M tS(GCU)F
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Topics Genes linked to topics (#251 - 260 )
tS(GCU)O tS(GCU)Q1 tS(UGA)Q2 tT(AGU)B tT(AGU)C tT(AGU)D tT(AGU)H tT(AGU)I1 tT(AGU)I2 tT(AGU)J
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Topics Genes linked to topics (#261 - 270 )
tT(AGU)N1 tT(AGU)N2 tT(AGU)O1 tT(AGU)O2 tT(UAG)Q2 tT(UGU)G1 tT(UGU)G2 tT(UGU)H tT(UGU)P tT(UGU)Q1
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Topics Genes linked to topics (#271 - 280 )
tV(AAC)E1 tV(AAC)E2 tV(AAC)G1 tV(AAC)G2 tV(AAC)G3 tV(AAC)H tV(AAC)J tV(AAC)K1 tV(AAC)K2 tV(AAC)L
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Topics Genes linked to topics (#281 - 290 )
tV(AAC)M1 tV(AAC)M2 tV(AAC)M3 tV(AAC)O tV(CAC)D tV(CAC)H tV(UAC)B tV(UAC)D tV(UAC)Q tW(CCA)G1
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Topics Genes linked to topics (#291 - 299 )
tW(CCA)G2 tW(CCA)J tW(CCA)K tW(CCA)M tW(CCA)P tW(UCA)Q tX(XXX)D tX(XXX)L tY(GUA)Q
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