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Molin C, et al.  (2009) mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress. RNA 15(4):600-14

Abstract: Under stress, cells need to optimize the activity of a wide range of gene products during the response phases: shock, adaptation, and recovery. This requires coordination of several levels of regulation, including turnover and translation efficiencies of mRNAs. Mitogen-activated protein (MAP) kinase pathways are implicated in many aspects of the environmental stress response, including initiation of transcription, translation efficiency, and mRNA turnover. In this study, we analyze mRNA turnover rates and mRNA steady-state levels at different time points following mild hyperosmotic shock in Saccharomyces cerevisiae cells. The regulation of mRNA stability is transient and affects most genes for which there is a change in transcript level. These changes precede and prepare for the changes in steady-state levels, both regarding the initial increase and the later decline of stress-induced mRNAs. The inverse is true for stress-repressed genes, which become stabilized during hyperosmotic stress in preparation of an increase as the cells recover. The MAP kinase Hog1 affects both steady-state levels and stability of stress-responsive transcripts, whereas the Hog1-activated kinase Rck2 influences steady-state levels without a major effect on stability. Regulation of mRNA stability is a wide-spread, but not universal, effect on stress-responsive transcripts during transient hyperosmotic stress. By destabilizing stress-induced mRNAs when their steady-state levels have reached a maximum, the cell prepares for the subsequent recovery phase when these transcripts are to return to normal levels. Conversely, stabilization of stress-repressed mRNAs permits their rapid accumulation in the recovery phase. Our results show that mRNA turnover is coordinated with transcriptional induction.

Status: Published Type: Journal Article PubMed ID: 19223440

Topics addressed in this paper

Number of different genes curated to this paper: 74

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
AGP2 AHP1 ALD3 ARP8 BMH1 COS8 DAK1 DOA1 EAF3 ENA1
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Omics yg ball
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Topics Genes linked to topics (#11 - 20 )
GLC7 GLK1 GLO1 GPD1 GRE3 GSH2 HIM1 HOG1 HOR2 HRR25
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Topics Genes linked to topics (#21 - 30 )
HSC82 HSF1 HSP104 HSP78 HTA1 HXT5 IMP2 IMP3 IXR1 KRE29
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Topics Genes linked to topics (#31 - 40 )
MEC1 MGA2 MYO3 NCE103 ORM2 PBS2 PIM1 POL2 PRE1 PRE3
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Topics Genes linked to topics (#41 - 50 )
PTC1 PTP2 PTP3 PUP2 RAD2 RAD53 RCK2 REV1 RHR2 RPL6A
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Topics Genes linked to topics (#51 - 60 )
RPS17A RSC8 RSC9 SAC3 SAC6 SAN1 SBP1 SCJ1 SML1 SPT10
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Topics Genes linked to topics (#61 - 70 )
SSA1 SSA2 SSA4 TFB3 TPS2 TRX1 VPS74 XRS2 YIM1 YKU70
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Topics Genes linked to topics (#71 - 74 )
YKU80 ZIM17 ZTA1 ZWF1
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