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Daniel JH  (2009) A fitness-based interferential genetics approach using hypertoxic/inactive gene alleles as references. Mol Genet Genomics 281(4):437-45

Abstract: Genetics, genomics, and biochemistry have all been of immense help in characterizing macromolecular cell entities and their interactions. Still, obtaining an overall picture of the functioning of even a simple unicellular species has remained a challenging task. One possible way to obtain a comprehensive picture has been described: by capitalizing on the observation that the overexpression on a multicopy plasmid of apparently any wild-type gene in yeast can lead to some negative effect on cell fitness (referring to the concept of "gene toxicity"), the FIG (fitness-based interferential genetics) approach was devised for selecting normal genes that are in antagonistic (and potentially also agonistic) relationship with a particular gene used as a reference. Herein, we take a complementary approach to FIG, by first selecting a "hypertoxic" allele of the reference gene-which easily provides the general possibility of obtaining gene products with the remarkable property of being inactive without altering their macromolecular interactivity-and then looking for the genes that interact functionally with this reference. Thus, FIG and the present approach (Trap-FIG), both taking advantage of the negative effects on cell fitness induced by various quantitative modulations in cellular networks, could potentially pave the way for the emergence of efficient in situ biochemistry.

Status: Published Type: Journal Article PubMed ID: 19152005

Topics addressed in this paper

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AIM21 AVO2 BUD5 CWH43 EHD3 GIS2 GPI15 HOT1 INO4 IRC19
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Topics Genes linked to topics (#11 - 17 )
OYE2 PKC1 RHO1 SED1 YAP3 YCL001W-A YLR001C
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball
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