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Narayanaswamy R, et al.  (2009) Systematic Definition of Protein Constituents along the Major Polarization Axis Reveals an Adaptive Reuse of the Polarization Machinery in Pheromone-Treated Budding Yeast. J Proteome Res 8(1):6-19

Abstract: Polarizing cells extensively restructure cellular components in a spatially and temporally coupled manner along the major axis of cellular extension. Budding yeast are a useful model of polarized growth, helping to define many molecular components of this conserved process. Besides budding, yeast cells also differentiate upon treatment with pheromone from the opposite mating type, forming a mating projection (the 'shmoo') by directional restructuring of the cytoskeleton, localized vesicular transport and overall reorganization of the cytosol. To characterize the proteomic localization changes accompanying polarized growth, we developed and implemented a novel cell microarray-based imaging assay for measuring the spatial redistribution of a large fraction of the yeast proteome, and applied this assay to identify proteins localized along the mating projection following pheromone treatment. We further trained a machine learning algorithm to refine the cell imaging screen, identifying additional shmoo-localized proteins. In all, we identified 74 proteins that specifically localize to the mating projection, including previously uncharacterized proteins (Ycr043c, Ydr348c, Yer071c, Ymr295c, and Yor304c-a) and known polarization complexes such as the exocyst. Functional analysis of these proteins, coupled with quantitative analysis of individual organelle movements during shmoo formation, suggests a model in which the basic machinery for cell polarization is generally conserved between processes forming the bud and the shmoo, with a distinct subset of proteins used only for shmoo formation. The net effect is a defined ordering of major organelles along the polarization axis, with specific proteins implicated at the proximal growth tip.

Status: Published Type: Journal Article PubMed ID: 19053807

Topics addressed in this paper

Number of different genes curated to this paper: 74

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ABP1 ABP140 AIM21 AIP1 ARK1 BCK1 BEM1 BEM3 BNI1 BOI1
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BSP1 BUD6 BZZ1 CAP1 CAP2 CAR1 CBK1 CDC10 CDC11 CDC48
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Topics Genes linked to topics (#21 - 30 )
CHS3 CHS5 EDE1 END3 ENT1 ENT2 EXO70 EXO84 FUS1 INP52
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Topics Genes linked to topics (#31 - 40 )
KEL1 KEL2 LAS17 LSG1 MID2 MYO2 MYO5 PAL1 PAN1 PEA2
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POP2 PRK1 RGD1 RVS161 RVS167 SAC6 SEC10 SEC15 SEC18 SEC2
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Topics Genes linked to topics (#51 - 60 )
SEC3 SEC31 SEC5 SEC6 SEC8 SFB3 SHM2 SHR3 SHS1 SLA1
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SLA2 SLG1 SMI1 SMY1 SRV2 SYP1 TDA2 TWF1 VRP1 WSC2
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Topics Genes linked to topics (#71 - 74 )
WSC3 YCR043C YMR295C YOR304C-A
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