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Hauser NC, et al.  (2001) Whole genome analysis of a wine yeast strain. Comp Funct Genomics 2(2):69-79

Abstract: Saccharomyces cerevisiae strains frequently exhibit rather specific phenotypic features needed for adaptation to a special environment. Wine yeast strains are able to ferment musts, for example, while other industrial or laboratory strains fail to do so. The genetic differences that characterize wine yeast strains are poorly understood, however. As a first search of genetic differences between wine and laboratory strains, we performed DNA-array analyses on the typical wine yeast strain T73 and the standard laboratory background in S288c. Our analysis shows that even under normal conditions, logarithmic growth in YPD medium, the two strains have expression patterns that differ significantly in more than 40 genes. Subsequent studies indicated that these differences correlate with small changes in promoter regions or variations in gene copy number. Blotting copy numbers vs. transcript levels produced patterns, which were specific for the individual strains and could be used for a characterization of unknown samples.

Status: Published Type: Journal Article PubMed ID: 18628902

Topics addressed in this paper

Number of different genes curated to this paper: 64

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ACO2 ADE1 ADE13 ARG4 BNA1 CUP1-1 CUP1-2 DDR48 FAR1 FLO1
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Genomic expression study yg ball
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Topics Genes linked to topics (#11 - 20 )
GCV1 GRX2 HIS7 LYS20 LYS21 LYS9 MDH2 MET17 MF(ALPHA)1 MF(ALPHA)2
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Topics Genes linked to topics (#21 - 30 )
MFA1 MFA2 MMF1 MRPS18 MTD1 PHO12 POR1 QCR7 REE1 RIB4
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Topics Genes linked to topics (#31 - 40 )
RPS27A SSU1 TAF9 URA1 URA3 YAR009C YAR010C YAR068W YBL113C YBR012W-A
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Topics Genes linked to topics (#41 - 50 )
YCL019W YCL020W YCL074W YCL075W YCL076W YER034W YER160C YFL068W YHB1 YIL082W
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DNA/RNA Sequence Features blue ball
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Topics Genes linked to topics (#51 - 60 )
YJL113W YJL114W YJR026W YJR027W YJR028W YKL030W YLR076C YML040W YML045W YMR051C
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    The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#61 - 64 )
YOL106W YPL257W YPR203W ZRT1
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