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Tucker CL and Fields S  (2004) Quantitative genome-wide analysis of yeast deletion strain sensitivities to oxidative and chemical stress. Comp Funct Genomics 5(3):216-24

Abstract: Understanding the actions of drugs and toxins in a cell is of critical importance to medicine, yet many of the molecular events involved in chemical resistance are relatively uncharacterized. In order to identify the cellular processes and pathways targeted by chemicals, we took advantage of the haploid Saccharomyces cerevisiae deletion strains (Winzeler et al., 1999). Although ~4800 of the strains are viable, the loss of a gene in a pathway affected by a drug can lead to a synthetic lethal effect in which the combination of a deletion and a normally sublethal dose of a chemical results in loss of viability. WE carried out genome-wide screens to determine quantitative sensitivities of the deletion set to four chemicals: hydrogen peroxide, menadione, ibuprofen and mefloquine. Hydrogen peroxide and menadione induce oxidative stress in the cell, whereas ibuprofen and mefloquine are toxic to yeast by unknown mechanisms. Here we report the sensitivities of 659 deletion strains that are sensitive to one or more of these four compounds, including 163 multichemicalsensitive strains, 394 strains specific to hydrogen peroxide and/or menadione, 47 specific to ibuprofen and 55 specific to mefloquine.We correlate these results with data from other large-scale studies to yield novel insights into cellular function.

Status: Published Type: Journal Article PubMed ID: 18629161

Topics addressed in this paper

Number of different genes curated to this paper: 63

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ALF1 APN2 ARO1 ARO2 ASI1 BAP2 BCK1 BPH1 BST1 CCP1
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CCS1 COG1 COG5 CTR1 ERD1 ERV14 FCY22 GIM5 GRX5 GUP1
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HYR1 LYP1 MRE11 MTG2 MTM1 MVP1 NBP2 NTG1 PEP8 PTR2
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QDR2 RAD50 RAD52 RLM1 RPE1 RRG1 RRG8 RTN2 SKN7 SKY1
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SLT2 SOD1 SPF1 SRX1 STI1 TAT1 TKL1 TPO1 TRP1 TRP2
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TRP3 TRP4 TRP5 TRX2 TSA1 UBX3 VPS17 XRS2 YAP1 YBP1
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Topics Genes linked to topics (#61 - 63 )
YDL114W YKE2 ZWF1
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