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Chang F, et al.  (2008) Analysis of chromosome III replicators reveals an unusual structure for the ARS318 silencer origin and a conserved WTW sequence within the origin recognition complex binding site. Mol Cell Biol 28(16):5071-81

Abstract: S. cerevisiae chromosome III encodes 11 autonomously replicating sequence (ARS) elements that function as chromosomal replicators. The essential 11-bp ARS consensus sequence (ACS) that binds the origin recognition complex (ORC) has been experimentally defined for most of these replicators, but not for ARS318 (HMR-I), which is one of the HMR silencers. In this study, we performed a comprehensive linker scan analysis of ARS318. Unexpectedly, this replicator depends on a 9/11 match to the ACS that positions the ORC binding site only 6-bp away from an Abf1p binding site. Although a largely inactive replicator on the chromosome, ARS318 becomes active if the nearby HMR-E silencer is deleted. We also performed a multiple sequence alignment of confirmed replicators on chromosomes III, VI and VII. This analysis revealed a highly conserved "WTW" motif 17-19 bp from the ACS that is functionally important and is apparent in the 228 phylogenetically conserved ARS elements among the six sensu stricto Saccharomyces species.

Status: Published Type: Journal Article PubMed ID: 18573888

Topics addressed in this paper

Number of different genes curated to this paper: 36

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Topics Genes linked to topics (#1 - 10 )
ARS1 ARS301 ARS302 ARS305 ARS306 ARS307 ARS309 ARS310 ARS313 ARS314
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Alias blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball
Function/Process blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Mutants/Phenotypes blue ball blue ball
Primary Literature blue ball blue ball blue ball
Strains/Constructs blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#11 - 20 )
ARS315 ARS316 ARS317 ARS318 ARS319 ARS600 ARS601 ARS602 ARS603 ARS603.5
Additional Literature blue ball blue ball blue ball blue ball blue ball
Alias blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Function/Process blue ball blue ball blue ball blue ball blue ball
Mutants/Phenotypes blue ball blue ball blue ball blue ball
Primary Literature blue ball blue ball blue ball blue ball blue ball
Strains/Constructs blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#21 - 30 )
ARS605 ARS606 ARS607 ARS609 ARS702 ARS704 ARS707 ARS710 ARS714 ARS717
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Jump to Summary Chart for:
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  • To go to the Locus page for a gene, click on the gene name.

Topics Genes linked to topics (#31 - 36 )
ARS718 ARS719 ARS727 ARS729 ARS731 ARS737
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball blue ball blue ball blue ball blue ball

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