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French SL, et al.  (2008) Visual analysis of the yeast 5S rRNA gene transcriptome: regulation and role of La protein. Mol Cell Biol 28(14):4576-87

Abstract: 5S rRNA genes from Saccharomyces cerevisiae were examined by Miller chromatin spreading, representing the first quantitative analysis of RNA polymerase III genes in situ by electron microscopy. These very short genes, approximately 132 nt, were engaged by one to three RNA polymerases. Analysis in different growth conditions and in strains with a 4-fold range in gene copy number revealed regulation at two levels: number of active genes and polymerase loading per gene. Repressive growth conditions (rapamycin or post-exponential growth) led first to fewer active genes, followed by lower polymerase loading per active gene. Pol III elongation rate was estimated in the range of 60-75 nt/sec with a reinitiation interval of approximately 1.2 sec. The yeast La protein, Lhp1, was associated with 5S genes. Its absence had no discernible effect on amount or size of 5S RNA produced, yet resulted in more polymerases per gene on average, consistent with a non-rate limiting role for Lhp1 in a process such as polymerase release/recycling upon transcription termination.

Status: Published Type: Journal Article PubMed ID: 18474615

Topics addressed in this paper

Number of different genes curated to this paper: 28

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Topics Genes linked to topics (#1 - 10 )
LHP1 RDN37-1 RDN37-2 RDN5-1 RET1 RPA12 RPA135 RPA14 RPA190 RPA34
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Topics Genes linked to topics (#11 - 20 )
RPA43 RPA49 RPB10 RPB5 RPB8 RPC10 RPC11 RPC17 RPC19 RPC25
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Topics Genes linked to topics (#21 - 28 )
RPC31 RPC34 RPC37 RPC40 RPC53 RPC82 RPO26 RPO31
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Function/Process blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

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