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Kennedy J and Yi EC  (2008) Use of gas-phase fractionation to increase protein identifications: application to the peroxisome. Methods Mol Biol 432:217-28

Abstract: Gas-phase fractionation (GPF), defined as iterative mass spectrometric interrogations of a sample over multiple smaller mass-to-charge (m/z) ranges, enables the ions selected for collision-induced dissociation to come from a greater number of unique peptides compared to the ions selected from the wide mass range scan in automated liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis. GPF is described as a means to achieve higher proteome coverage than multiple LC-MS/MS analyses of unfractionated complex peptide mixtures. It is applied to organellar proteomics through analysis of yeast peroxisomal proteins obtained from a discontinuous Nycodenz gradient fraction known to be enriched with yeast peroxisomal membrane proteins.

Status: Published Type: Journal Article PubMed ID: 18370021

Topics addressed in this paper

Number of different genes curated to this paper: 39

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Topics Genes linked to topics (#1 - 10 )
AAT2 ANT1 CAT2 CIT2 CTA1 DAL7 DCI1 ECI1 FAA2 FAT1
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Topics Genes linked to topics (#11 - 20 )
FOX2 GTO1 IDP3 LYS1 MDH2 MDH3 MLS1 NPY1 PCD1 PCS60
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Topics Genes linked to topics (#21 - 30 )
PEX11 PEX12 PEX13 PEX14 PEX15 PEX17 PEX2 PEX3 PEX4 PEX6
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Topics Genes linked to topics (#31 - 39 )
PEX7 PEX8 POT1 POX1 PXA1 PXA2 SPS19 STR3 TES1
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