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Shim EY, et al.  (2007) RSC mobilizes nucleosomes to improve accessibility of repair machinery to the damaged chromatin. Mol Cell Biol 27(5):1602-13

Abstract: Repair of DNA double-strand breaks (DSBs) protects cells and organisms, as well as their genome integrity. As DSB repair occurs in the context of chromatin, chromatin must be modified to prevent it from inhibiting DSB repair. Evidence supports the role of histone modifications and ATP-dependent chromatin remodeling in repair and signaling of chromosome DSBs. The key question is then what is the nature of chromatin altered by DSBs and how remodeling of chromatin facilitates DSB repair. Here we report a chromatin alteration caused by a single HO endonuclease-generated DSB at the yeast MAT locus. The break induces rapid nucleosome migration to form histone-free DNA of a few hundred base pairs immediately adjacent to the break. The DSB-induced nucleosome repositioning appears independent of end processing, as it still occurs when the 5' to 3' degradation of the DNA end is markedly reduced. The tetracycline-controlled depletion of Sth1, the ATPase of RSC, or deletion of RSC2 severely reduces chromatin remodeling and loading of Mre11 and Yku proteins at the DSB. Depletion of Sth1 also reduces phosphorylation of H2A, processing and joining of DSBs. We propose that the RSC-mediated chromatin remodeling at the DSB prepares chromatin to allow repair machinery to access the break and is vital for efficient DSB repair.

Status: Published Type: Journal Article PubMed ID: 17178837

Topics addressed in this paper

Number of different genes curated to this paper: 12

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Topics Genes linked to topics (#1 - 10 )
HHT1 HHT2 HO HTA1 HTA2 MATA MATALPHA MRE11 RSC1 RSC2
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
DNA/RNA Sequence Features blue ball blue ball
Genetic Interactions blue ball
Protein Processing/Modification/Regulation blue ball blue ball
Protein-Nucleic Acid Interactions blue ball blue ball blue ball blue ball blue ball
Strains/Constructs blue ball blue ball blue ball

Topics Genes linked to topics (#11 - 12 )
STH1 YKU70
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Mutants/Phenotypes blue ball
Primary Literature blue ball
Protein-Nucleic Acid Interactions blue ball
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