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Blake WJ, et al.  (2006) Phenotypic consequences of promoter-mediated transcriptional noise. Mol Cell 24(6):853-65

Abstract: A more complete understanding of the causes and effects of cell-cell variability in gene expression is needed to elucidate whether the resulting phenotypes are disadvantageous or confer some adaptive advantage. Here we show that increased variability in gene expression, affected by the sequence of the TATA box, can be beneficial after an acute change in environmental conditions. We rationally introduce mutations within the TATA region of an engineered Saccharomyces cerevisiae GAL1 promoter and measure promoter responses that can be characterized as being either highly variable and rapid or steady and slow. We computationally illustrate how a stable transcription scaffold can result in "bursts" of gene expression, enabling rapid individual cell responses in the transient and increased cell-cell variability at steady state. We experimentally verify computational predictions that the rapid response and increased cell-cell variability enabled by TATA-containing promoters confer a clear benefit in the face of an acute environmental stress.

Status: Published Type: Journal Article PubMed ID: 17189188

Topics addressed in this paper

Number of different genes curated to this paper: 33

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
ADA2 CHD1 GAL1 GAL4 GCN5 HFI1 NGG1 RPB10 RPB11 RPB2
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Topics Genes linked to topics (#11 - 20 )
RPB3 RPB4 RPB5 RPB7 RPB8 RPB9 RPC10 RPO21 RPO26 SGF11
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Topics Genes linked to topics (#21 - 30 )
SGF29 SGF73 SPT15 SPT20 SPT3 SPT7 SPT8 SUS1 TAF10 TAF12
Additional Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
Computational analysis blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#31 - 33 )
TAF5 TAF6 TAF9
Additional Literature blue ball blue ball blue ball
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