Blake WJ, et al. (2006) Phenotypic consequences of promoter-mediated transcriptional noise. Mol Cell 24(6):853-65
Abstract: A more complete understanding of the causes and effects of cell-cell variability in gene expression is needed to elucidate whether the resulting phenotypes are disadvantageous or confer some adaptive advantage. Here we show that increased variability in gene expression, affected by the sequence of the TATA box, can be beneficial after an acute change in environmental conditions. We rationally introduce mutations within the TATA region of an engineered Saccharomyces cerevisiae GAL1 promoter and measure promoter responses that can be characterized as being either highly variable and rapid or steady and slow. We computationally illustrate how a stable transcription scaffold can result in "bursts" of gene expression, enabling rapid individual cell responses in the transient and increased cell-cell variability at steady state. We experimentally verify computational predictions that the rapid response and increased cell-cell variability enabled by TATA-containing promoters confer a clear benefit in the face of an acute environmental stress.
| Status: Published | Type: Journal Article | PubMed ID: 17189188 |
Topics addressed in this paper
Number of different genes curated to this paper: 33
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| Topics | Topics not linked to Genes | Genes linked to topics (#1 - 10 ) | |||||||||
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| ADA2 | CHD1 | GAL1 | GAL4 | GCN5 | HFI1 | NGG1 | RPB10 | RPB11 | RPB2 | ||
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| Topics | Genes linked to topics (#11 - 20 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| RPB3 | RPB4 | RPB5 | RPB7 | RPB8 | RPB9 | RPC10 | RPO21 | RPO26 | SGF11 | |
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| Computational analysis | | | | | | | | | | |
| Topics | Genes linked to topics (#21 - 30 ) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SGF29 | SGF73 | SPT15 | SPT20 | SPT3 | SPT7 | SPT8 | SUS1 | TAF10 | TAF12 | |
| Additional Literature | | | | | | | | | | |
| Computational analysis | | | | | | | | | | |
- To find other papers on a gene and topic, click on the colored ball in the appropriate box.
- displays other papers with information about that topic for that gene.
- displays other papers in SGD that are associated with that topic.
The topic is addressed in these papers but does not describe a specific gene or chromosomal feature.
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| Topics | Genes linked to topics (#31 - 33 ) | ||
|---|---|---|---|
| TAF5 | TAF6 | TAF9 | |
| Additional Literature | | | |
| Computational analysis | | | |





