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Fisk DG, et al.  (2006) Saccharomyces cerevisiae S288C genome annotation: a working hypothesis. Yeast 23(12):857-65

Abstract: The S. cerevisiae genome is the most well-characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (Goffeau et al., 1996). The Saccharomyces Genome Database (SGD; www.yeastgenome.org) (Hirschman et al., 2006), the community-designated repository for this reference genome, strives to ensure that the S. cerevisiae annotation is as accurate and useful as possible. At SGD, the S. cerevisiae genome sequence and annotation are treated as a working hypothesis, which must be repeatedly tested and refined. In this paper, in celebration of the tenth anniversary of the completion of the S. cerevisiae genome sequence, we discuss the ways in which the S. cerevisiae sequence and annotation have changed, consider the multiple sources of experimental and comparative data on which these changes are based, and describe our methods for evaluating, incorporating and documenting these new data.

Status: Published Type: Journal Article PubMed ID: 17001629

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Number of different genes curated to this paper: 723

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
AHT1 API2 APQ13 BSC3 BUD19 BUD26 BUD28 BUD30 FYV1 GDT1
Databases yg ball
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#11 - 20 )
HHY1 JIP3 KSH1 MBB1 NAG1 OPI11 OPI6 OPI7 OPI8 OPI9
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#21 - 30 )
PAU10 PAU11 PAU12 PAU13 PAU14 PAU15 PAU17 PAU18 PAU19 PAU20
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#31 - 40 )
PAU21 PAU22 PAU8 PAU9 PSY1 Q0010 Q0017 Q0032 Q0092 Q0142
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#41 - 50 )
Q0143 Q0144 Q0182 Q0297 RRT1 RRT13 RRT16 RRT7 SRF1 VPS61
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#51 - 60 )
VPS63 VPS65 VPS69 YAL004W YAL016C-A YAL016C-B YAL019W-A YAL026C-A YAL031W-A YAL034C-B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#61 - 70 )
YAL042C-A YAL045C YAL047W-A YAL056C-A YAL059C-A YAL066W YAR030C YAR047C YAR053W YAR060C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#71 - 80 )
YAR069C YAR070C YBL006W-A YBL012C YBL039C-A YBL053W YBL062W YBL065W YBL070C YBL073W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#81 - 90 )
YBL077W YBL083C YBL094C YBL100C YBL107W-A YBL108W YBL109W YBR027C YBR032W YBR051W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball
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Topics Genes linked to topics (#91 - 100 )
YBR064W YBR076C-A YBR089W YBR099C YBR113W YBR116C YBR126W-B YBR131C-A YBR134W YBR141W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#101 - 110 )
YBR144C YBR174C YBR178W YBR190W YBR191W-A YBR206W YBR209W YBR223W-A YBR224W YBR226C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#111 - 120 )
YBR232C YBR277C YBR292C YBR300C YCL022C YCL023C YCL041C YCL046W YCL065W YCL076W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#121 - 130 )
YCR001W YCR006C YCR013C YCR022C YCR025C YCR038W-A YCR041W YCR045W-A YCR047W-A YCR049C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#131 - 140 )
YCR064C YCR081C-A YCR085W YCR087W YCR095W-A YCR102W-A YDL011C YDL016C YDL023C YDL025W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#141 - 150 )
YDL026W YDL032W YDL034W YDL041W YDL050C YDL062W YDL068W YDL071C YDL094C YDL114W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#151 - 160 )
YDL152W YDL158C YDL162C YDL163W YDL172C YDL176W YDL185C-A YDL186W YDL187C YDL196W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#161 - 170 )
YDL221W YDL228C YDL241W YDL242W YDR008C YDR010C YDR015C YDR029W YDR034C-A YDR048C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#171 - 180 )
YDR094W YDR133C YDR157W YDR187C YDR193W YDR199W YDR203W YDR209C YDR215C YDR230W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#181 - 190 )
YDR250C YDR269C YDR271C YDR274C YDR278C YDR290W YDR320W-B YDR327W YDR338C YDR344C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#191 - 200 )
YDR354C-A YDR355C YDR366C YDR371C-A YDR396W YDR401W YDR413C YDR417C YDR426C YDR431W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#201 - 210 )
YDR433W YDR442W YDR445C YDR455C YDR467C YDR491C YDR509W YDR526C YDR535C YDR537C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#211 - 220 )
YDR543C YDR544C YDR545C-A YEL009C-A YEL010W YEL014C YEL018C-A YEL020C-B YEL028W YEL034C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#221 - 230 )
YEL053W-A YEL074W YEL075W-A YER006C-A YER023C-A YER038W-A YER039C-A YER046W-A YER066C-A YER067C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#231 - 240 )
YER068C-A YER076W-A YER079C-A YER084W-A YER087C-A YER088C-A YER088W-B YER090C-A YER091C-A YER097W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#241 - 250 )
YER107W-A YER119C-A YER133W-A YER135C YER137W-A YER145C-A YER147C-A YER148W-A YER152W-A YER165C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#251 - 260 )
YER172C-A YER188C-A YER188W YER190C-A YFL012W-A YFL013W-A YFL015C YFL015W-A YFL019C YFL021C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#261 - 270 )
YFL031C-A YFL032W YFL063W YFR009W-A YFR010W-A YFR036W-A YFR052C-A YFR054C YFR056C YGL010W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#271 - 280 )
YGL024W YGL034C YGL041C YGL042C YGL052W YGL069C YGL072C YGL074C YGL088W YGL102C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#281 - 290 )
YGL109W YGL118C YGL123C-A YGL132W YGL149W YGL152C YGL165C YGL177W YGL182C YGL188C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#291 - 300 )
YGL199C YGL214W YGL217C YGL218W YGL239C YGR011W YGR022C YGR025W YGR039W YGR045C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#301 - 310 )
YGR051C YGR064W YGR068W-A YGR069W YGR073C YGR107W YGR114C YGR115C YGR122C-A YGR137W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#311 - 320 )
YGR139W YGR151C YGR160W YGR164W YGR176W YGR182C YGR190C YGR219W YGR228W YGR242W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#321 - 330 )
YGR259C YGR265W YGR269W YGR270C-A YGR290W YGR291C YGR293C YGR296C-A YGR296C-B YHL002C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#331 - 340 )
YHL005C YHL006W-A YHL019W-A YHL030W-A YHL034W-A YHL037C YHL041W YHL046W-A YHL050W-A YHR028W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#341 - 350 )
YHR032C-A YHR032W-A YHR049C-A YHR052W-A YHR054W-A YHR056W-A YHR063W-A YHR069C-A YHR070C-A YHR071C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#351 - 360 )
YHR073C-B YHR073W-A YHR095W YHR125W YHR130C YHR131W-A YHR137C-A YHR139C-A YHR145C YHR165W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#361 - 370 )
YHR177W YHR180C-B YHR180W YHR180W-A YHR182C-A YHR193C-A YHR212C YHR214W-A YHR217C YHR218W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#371 - 380 )
YIL012W YIL020C-A YIL021C-A YIL025C YIL028W YIL029W-A YIL030W-A YIL032C YIL047C-A YIL058W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#381 - 390 )
YIL059C YIL066W-A YIL068W-A YIL071W-A YIL086C YIL100C-A YIL100W YIL115W-A YIL141W YIL142C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#391 - 400 )
YIL156W-A YIL171W-A YIL177W-A YIM2 YIR017W-A YIR020C-B YIR020W-A YIR023C-A YIR030W-A YIR036W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#401 - 410 )
YIR040C YJL007C YJL009W YJL020W-A YJL022W YJL026C-A YJL032W YJL047C-A YJL064W YJL067W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#411 - 420 )
YJL086C YJL119C YJL120W YJL127W-A YJL135W YJL136W-A YJL150W YJL152W YJL156W-A YJL169W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#421 - 430 )
YJL182C YJL195C YJL197C-A YJL202C YJL211C YJL215C YJL220W YJL222W-A YJL222W-B YJL225W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#431 - 440 )
YJR018W YJR020W YJR037W YJR038C YJR071W YJR087W YJR114W YJR115W YJR128W YJR140W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#441 - 450 )
YJR157W YJR162C YKL030W YKL031W YKL036C YKL053W YKL066W YKL083W YKL097C YKL111C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#451 - 460 )
YKL115C YKL118W YKL123W YKL131W YKL136W YKL145W-A YKL147C YKL153W YKL156C-A YKL162C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#461 - 470 )
YKL165C-A YKL169C YKL177W YKL202W YKL223W YKL225W YKR012C YKR032W YKR033C YKR040C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#471 - 480 )
YKR047W YKR073C YLL019W-A YLL020C YLL037W YLL044W YLL047W YLL059C YLL065W YLL066W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#481 - 490 )
YLL066W-B YLL067W-A YLR041W YLR076C YLR101C YLR111W YLR112W YLR120W-A YLR122C YLR123C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#491 - 500 )
YLR124W YLR140W YLR149C-A YLR154W-A YLR154W-B YLR154W-E YLR154W-F YLR163W-A YLR169W YLR171W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#501 - 510 )
YLR184W YLR198C YLR202C YLR217W YLR222C-A YLR230W YLR232W YLR235C YLR236C YLR252W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#511 - 520 )
YLR255C YLR269C YLR279W YLR280C YLR282C YLR286W-A YLR294C YLR296W YLR299C-A YLR302C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#521 - 530 )
YLR311C YLR317W YLR334C YLR339C YLR347W-A YLR349W YLR364C-A YLR365W YLR366W YLR374C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#531 - 540 )
YLR379W YLR399W-A YLR400W YLR402W YLR416C YLR428C YLR434C YLR437C-A YLR444C YLR458W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#541 - 550 )
YLR463C YLR466C-A YLR466C-B YLR467C-A YML009C-A YML009W-B YML012C-A YML031C-A YML034C-A YML047W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#551 - 560 )
YML057C-A YML084W YML090W YML094C-A YML099W-A YML101C-A YML122C YML133W-A YML133W-B YMR007W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#561 - 570 )
YMR013C-A YMR013W-A YMR031W-A YMR046W-A YMR052C-A YMR057C YMR075C-A YMR082C YMR086C-A YMR103C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#571 - 580 )
YMR119W-A YMR122C YMR135W-A YMR141C YMR141W-A YMR153C-A YMR158W-B YMR172C-A YMR173W-A YMR193C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#581 - 590 )
YMR194C-A YMR245W YMR254C YMR272W-A YMR290W-A YMR304C-A YMR306C-A YMR307C-A YMR316C-B YMR320W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#591 - 600 )
YMR324C YMR326C YNL013C YNL017C YNL028W YNL043C YNL057W YNL067W-A YNL089C YNL097W-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#601 - 610 )
YNL103W-A YNL109W YNL114C YNL120C YNL144W-A YNL150W YNL170W YNL171C YNL174W YNL179C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#611 - 620 )
YNL198C YNL203C YNL205C YNL226W YNL228W YNL235C YNL266W YNL276C YNL285W YNL303W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#621 - 630 )
YNL319W YNL324W YNL337W YNL338W YNR003W-A YNR005C YNR042W YOL013W-B YOL035C YOL037C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#631 - 640 )
YOL046C YOL050C YOL079W YOL085C YOL085W-A YOL099C YOL106W YOL118C YOL134C YOL150C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#641 - 650 )
YOL160W YOL166C YOR008W-B YOR015W YOR024W YOR029W YOR041C YOR050C YOR053W YOR055W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#651 - 660 )
YOR072W-A YOR073W-A YOR082C YOR102W YOR121C YOR139C YOR146W YOR169C YOR170W YOR199W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#661 - 670 )
YOR200W YOR203W YOR214C YOR218C YOR225W YOR248W YOR263C YOR277C YOR282W YOR300W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#671 - 680 )
YOR309C YOR314W YOR314W-A YOR318C YOR325W YOR331C YOR333C YOR335W-A YOR343C YOR345C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#681 - 690 )
YOR364W YOR366W YOR376W YOR379C YOR392W YPL025C YPL035C YPL044C YPL073C YPL080C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#691 - 700 )
YPL136W YPL142C YPL182C YPL185W YPL238C YPL250W-A YPL251W YPL261C YPL279C YPR002C-A
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#701 - 710 )
YPR012W YPR014C YPR016W-A YPR039W YPR050C YPR053C YPR059C YPR064W YPR076W YPR092W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#711 - 720 )
YPR099C YPR123C YPR126C YPR130C YPR136C YPR142C YPR146C YPR150W YPR169W-A YPR170C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#721 - 723 )
YPR177C YPR195C YPR197C
Primary Literature blue ball blue ball blue ball

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