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Kresnowati MT, et al.  (2006) When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation. Mol Syst Biol 2():49

Abstract: Within the first 5 min after a sudden relief from glucose limitation, Saccharomyces cerevisiae exhibited fast changes of intracellular metabolite levels and a major transcriptional reprogramming. Integration of transcriptome and metabolome data revealed tight relationships between the changes at these two levels. Transcriptome as well as metabolite changes reflected a major investment in two processes: adaptation from fully respiratory to respiro-fermentative metabolism and preparation for growth acceleration. At the metabolite level, a severe drop of the AXP pools directly after glucose addition was not accompanied by any of the other three NXP. To counterbalance this loss, purine biosynthesis and salvage pathways were transcriptionally upregulated in a concerted manner, reflecting a sudden increase of the purine demand. The short-term dynamics of the transcriptome revealed a remarkably fast decrease in the average half-life of downregulated genes. This acceleration of mRNA decay can be interpreted both as an additional nucleotide salvage pathway and an additional level of glucose-induced regulation of gene expression.

Status: Published Type: Journal Article PubMed ID: 16969341

Topics addressed in this paper

Number of different genes curated to this paper: 141

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
AAH1 ABF1 ACO1 ADE1 ADE12 ADE13 ADE17 ADE2 ADE3 ADE4
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Topics Genes linked to topics (#11 - 20 )
ADE5,7 ADE6 ADE8 AFT2 ASH1 ATH1 BAS1 CBF1 CIN5 CIT2
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Topics Genes linked to topics (#21 - 30 )
CSR2 DIM1 FBP26 FCY2 FHL1 FKH2 FMP43 GAC1 GAL4 GCD10
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Topics Genes linked to topics (#31 - 40 )
GCD14 GCN4 GCV1 GCV2 GCV3 GDB1 GIP2 GLC3 GLG1 GLK1
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Topics Genes linked to topics (#41 - 50 )
GLY1 GPH1 GSY1 GSY2 GUA1 HAP4 HXK1 HXK2 IDH2 IDP3
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Topics Genes linked to topics (#51 - 60 )
IGD1 IMA4 IMD3 IMD4 ISF1 JEN1 KGD2 LEU3 LSC1 MDH1
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Topics Genes linked to topics (#61 - 70 )
MDH2 MET14 MET16 MET2 MET28 MET3 MET31 MET32 MET4 MET6
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Topics Genes linked to topics (#71 - 80 )
MRK1 MSN2 MSN4 MTD1 MUP1 MUP3 NCL1 NOP1 NOP58 NRG1
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Topics Genes linked to topics (#81 - 90 )
NTH2 PFK26 PFK27 PGM2 PIG1 PIG2 PYC1 RAP1 RGI1 RGI2
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Topics Genes linked to topics (#91 - 100 )
ROX3 RPA12 RPA135 RPA34 RPA43 RPA49 RPB10 RPB11 RPB5 RPB8
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Topics Genes linked to topics (#101 - 110 )
RPB9 RPC11 RPC19 RPC31 RPC37 RPC82 RPO26 RRN11 RRN7 SAH1
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Topics Genes linked to topics (#111 - 120 )
SAM1 SDH1 SDH3 SER1 SER2 SER3 SER33 SHH3 SHH4 SHM2
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Topics Genes linked to topics (#121 - 130 )
SIP4 SKN7 SKO1 SNT2 SNU13 SOL1 SPB1 SUC2 SUC4 SUT1
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Topics Genes linked to topics (#131 - 140 )
SWI4 TMA10 TPS1 TPS2 TRM2 TRM7 TRM82 TSL1 UGP1 UME6
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Topics Genes linked to topics (#141 )
YMR206W
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