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Hancock LC, et al.  (2006) Genomic analysis of the Opi- phenotype. Genetics 173(2):621-34

Abstract: Most of the phospholipid biosynthetic genes of Saccharomyces cerevisiae are coordinately regulated in response to inositol and choline. Inositol affects the intracellular levels of phosphatidic acid (PA). Opi1p is a repressor of the phospholipid biosynthetic genes and specifically binds PA in the endoplasmic reticulum. In the presence of inositol, PA levels decrease releasing Opi1p into the nucleus where it represses transcription. The opi1 mutant overproduces and excretes inositol (Opi- phenotype). To better understand the mechanism of Opi1p repression, the viable yeast deletion set was screened to identify Opi- mutants. In total, 89 Opi- mutants were identified of which 7 were previously known to have the Opi- phenotype. The Opi- mutant collection included genes with roles in phospholipid biosynthesis, transcription, protein processing/synthesis, and protein trafficking. Included in this set were all non-essential components of the NuA4 HAT complex and six proteins in the Rpd3p-Sin3p HDAC complex. It has previously been shown that defects in phosphatidylcholine synthesis (cho2 and opi3) yield the Opi- phenotype because of a build-up of PA. However, in this case the Opi- phenotype is conditional because PA can be shuttled through a salvage pathway (Kennedy pathway) by adding choline to the growth medium. Seven new mutants present in the Opi- collection (fun26, kex1, nup84, tps1, mrpl38, mrpl49, and opi10/yol032w) were also suppressed by choline suggesting that these affect PC synthesis. Regulation in response to inositol is also coordinated with the Unfolded Protein Response (UPR). Consistent with this, several Opi- mutants were found affect the UPR (yhi9, ede1, and vps74).

Status: Published Type: Journal Article PubMed ID: 16582425

Topics addressed in this paper

Number of different genes curated to this paper: 92

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Topics Topics not linked to Genes Genes linked to topics (#1 - 10 )
AGE2 ALG9 APL5 APL6 APM3 APS3 ARC18 BSD2 CHO2 CKB2
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Topics Genes linked to topics (#11 - 20 )
DEP1 DID4 EAF1 EAF3 EAF5 EAF7 EDE1 ERG28 FUN26 HAC1
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Topics Genes linked to topics (#21 - 30 )
ITR1 KEX1 LDB16 LEM3 LIP2 LOA1 MRP49 MRPL38 MRPL49 MTQ1
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Topics Genes linked to topics (#31 - 40 )
MUB1 MUD1 NUP84 OPI1 OPI10 OPI11 OPI3 OPI6 OPI7 OPI8
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Topics Genes linked to topics (#41 - 50 )
OPI9 PEP3 PEP5 PEP7 PEP8 PHO23 RAS2 REG1 RGP1 RPD3
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Topics Genes linked to topics (#51 - 60 )
RTS1 RXT2 SAP30 SIN3 SNF7 SNF8 SRN2 STP22 TNA1 TPS1
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Topics Genes linked to topics (#61 - 70 )
UBC13 UME1 UME6 VAM6 VPS13 VPS16 VPS17 VPS21 VPS24 VPS25
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Topics Genes linked to topics (#71 - 80 )
VPS27 VPS28 VPS29 VPS3 VPS30 VPS34 VPS35 VPS36 VPS38 VPS4
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Topics Genes linked to topics (#81 - 90 )
VPS41 VPS5 VPS51 VPS61 VPS74 VPS8 VPS9 YAF9 YHI9 YPT6
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Topics Genes linked to topics (#91 - 92 )
YPT7 YSP3
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