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Byrne KP and Wolfe KH  (2005) The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species. Genome Res 15(10):1456-61

Abstract: We developed the Yeast Gene Order Browser (YGOB; http://wolfe.gen.tcd.ie/ygob) to facilitate visual comparisons and computational analysis of synteny relationships in yeasts. The data presented in YGOB, currently covering seven species, are based on sets of homologous genes that have been intensively manually curated based on both sequence similarity and genomic context (synteny). We reconciled different laboratories' lists of paralogous Saccharomyces cerevisiae gene pairs formed by genome duplication (ohnologs), and present near-exhaustive lists of the ohnolog pairs retained in S. cerevisiae (551, including 22 previously unidentified), Saccharomyces castellii (599), and Candida glabrata (404).

Status: Published Type: Journal Article PubMed ID: 16169922

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AAC3 AAP1 ACA1 ACE2 ADE16 ADE17 ADH1 ADH5 ADY2 ADY3
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AQR1 ARE1 ARE2 ARF1 ARF2 ARK1 ASI1 ASI3 ASK10 ASM4
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ASN1 ASN2 AST1 AST2 ATO2 ATR1 AVT5 AVT6 BAP2 BAP3
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BCH1 BCH2 BIT2 BIT61 BOI1 BOI2 BSC2 BTN2 BUD7 BUL1
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BUL2 CAD1 CAF120 CAF4 CAN1 CCW12 CDC19 CDC50 CHS6 CIN5
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CIT1 CIT2 CKI1 CMK1 CMK2 CNM67 COQ8 COT1 COX5A COX5B
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CPT1 CSH1 CSR2 CST26 CST6 CUE1 CUE4 CUP2 CUP9 CUR1
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Topics Genes linked to topics (#91 - 100 )
CYC1 CYC7 DAL80 DCV1 DDR2 DLS1 DOM34 DOT6 DPB3 ECM10
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Topics Genes linked to topics (#101 - 110 )
ECM13 ECM18 ECM21 ECM22 ECM3 EDS1 EEB1 EFT1 EFT2 EHT1
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Topics Genes linked to topics (#111 - 120 )
EKI1 ELO1 EMI2 EPT1 ERP1 ERP6 ERV14 ERV15 ESC8 EUG1
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Topics Genes linked to topics (#121 - 130 )
FAA1 FAA4 FEN1 FKH1 FKH2 FLC2 FRD1 FRK1 FRT1 FRT2
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Topics Genes linked to topics (#131 - 140 )
FUN19 GAL1 GAL3 GBP2 GCY1 GDH1 GDH3 GEA1 GEA2 GFA1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#141 - 150 )
GFD2 GIN4 GIP3 GIS1 GLG1 GLG2 GLK1 GND1 GNP1 GPB1
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Topics Genes linked to topics (#151 - 160 )
GPB2 GRS1 GRS2 GRX1 GRX2 GRX6 GRX7 GSY1 GSY2 GZF3
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Topics Genes linked to topics (#161 - 170 )
HAA1 HAL5 HAL9 HEF3 HER1 HES1 HLR1 HMS2 HOR2 HOR7
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Topics Genes linked to topics (#171 - 180 )
HRB1 HSC82 HSP150 HSP82 HXK1 HXK2 HXT1 HXT3 HXT4 HXT5
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#181 - 190 )
HXT6 HXT7 HYP2 ICT1 IDP2 IDP3 IGD1 IML2 IOC3 IRA1
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Topics Genes linked to topics (#191 - 200 )
IRA2 IRC23 IRS4 KCC4 KES1 KIN4 KKQ8 KRE2 KTR2 KTR5
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#201 - 210 )
KTR6 KTR7 LCB3 LEU4 LEU9 LRE1 LSB3 LYS20 LYS21 MDV1
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Topics Genes linked to topics (#211 - 220 )
MET31 MET32 MIG2 MIG3 MIP6 MKK1 MKK2 MNN4 MRH1 MRS3
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#221 - 230 )
MRS4 MSN2 MSN4 MYO2 MYO4 NBP1 NCA3 NET1 NGL2 NGL3
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Topics Genes linked to topics (#231 - 240 )
NHP6A NHP6B NMA1 NMA2 NPP1 NPP2 NRG1 NRG2 NSI1 NTG1
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Topics Genes linked to topics (#241 - 250 )
NTG2 NTH1 NTH2 NUP157 NUP170 NUP53 OAF1 OSM1 PDI1 PDR1
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Topics Genes linked to topics (#251 - 260 )
PDR3 PDR8 PES4 PET9 PGA3 PHD1 PHO87 PHO90 PIP2 PIR1
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Topics Genes linked to topics (#261 - 270 )
PIR3 PLM2 PMP1 PMP2 PMT2 PMT3 POR1 POR2 PPH21 PPH22
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Topics Genes linked to topics (#271 - 280 )
PRK1 PRO1 PRS4 PRY1 PRY2 PSK1 PSK2 PSP1 PST2 PTC2
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Topics Genes linked to topics (#281 - 290 )
PTC3 PTM1 PYC1 PYC2 PYK2 QDR1 RCK1 RCK2 RCR1 RCR2
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#291 - 300 )
REB1 RFS1 RGC1 RGM1 RGT1 RGT2 RHR2 RLM1 ROD1 ROG1
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ROG3 RPH1 RPL11A RPL11B RPL12A RPL12B RPL13A RPL13B RPL14A RPL14B
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RPL15A RPL15B RPL16A RPL16B RPL17A RPL17B RPL18A RPL18B RPL19A RPL19B
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RPL1A RPL1B RPL20A RPL20B RPL21A RPL21B RPL22A RPL22B RPL23A RPL23B
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RPL24A RPL24B RPL26A RPL26B RPL27A RPL27B RPL2A RPL2B RPL31A RPL31B
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RPL33A RPL33B RPL34A RPL34B RPL35A RPL35B RPL36A RPL36B RPL37A RPL37B
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Topics Genes linked to topics (#351 - 360 )
RPL40A RPL40B RPL41A RPL41B RPL42A RPL42B RPL43A RPL43B RPL4A RPL4B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#361 - 370 )
RPL6A RPL6B RPL7A RPL7B RPL8A RPL8B RPS0A RPS0B RPS10A RPS10B
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Topics Genes linked to topics (#371 - 380 )
RPS11A RPS11B RPS14A RPS14B RPS16A RPS16B RPS17A RPS17B RPS18A RPS18B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#381 - 390 )
RPS19A RPS19B RPS1A RPS1B RPS21A RPS21B RPS22A RPS22B RPS23A RPS23B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#391 - 400 )
RPS24A RPS24B RPS25A RPS25B RPS26A RPS26B RPS27A RPS27B RPS28A RPS28B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#401 - 410 )
RPS29A RPS29B RPS30A RPS30B RPS4A RPS4B RPS6A RPS6B RPS7A RPS7B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#411 - 420 )
RPS8A RPS8B RPS9A RPS9B RSF2 RTN1 RTN2 RTR1 RTR2 SAM1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#421 - 430 )
SAM2 SAP185 SAP190 SCO1 SCO2 SCS2 SCS22 SDC25 SDS23 SDS24
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#431 - 440 )
SER3 SER33 SET3 SET4 SHC1 SIP3 SKG3 SKN7 SKT5 SLF1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#441 - 450 )
SLM1 SLM2 SMP1 SMY2 SNC1 SNC2 SNF3 SOK2 SOL1 SOL2
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#451 - 460 )
SOL3 SOL4 SPS2 SPS22 SRL1 SRO77 SRO9 SSA3 SSA4 SSB1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#461 - 470 )
SSB2 SSC1 SSE1 SSE2 SSF1 SSF2 STP1 STP2 SUR1 SVS1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#471 - 480 )
SWI5 SYC1 SYH1 TAX4 TBS1 TDA9 TDH2 TDH3 TEF1 TEF2
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#481 - 490 )
TFC7 THI74 TIF1 TIF2 TIF4631 TIF4632 TKL1 TKL2 TOD6 TOF2
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Topics Genes linked to topics (#491 - 500 )
TOM70 TOM71 TOR1 TOR2 TOS4 TOS8 TPK1 TPK3 TPM1 TPM2
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Topics Genes linked to topics (#501 - 510 )
TPO2 TPO3 TPS3 TRE1 TRE2 TRI1 TRK1 TRK2 TRR1 TRR2
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#511 - 520 )
TSL1 TUB1 TUB3 UAF30 UBC4 UBC5 UBP13 UBP9 UBX6 UBX7
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#521 - 530 )
UGP1 UPC2 URA10 URA5 URA7 URA8 USV1 UTH1 UTR1 VHR1
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Topics Genes linked to topics (#531 - 540 )
VHR2 VPS21 WHI3 WHI4 YAL037W YAP1 YAP1801 YAP1802 YAP5 YAP6
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#541 - 550 )
YBL059W YBP1 YBP2 YBR016W YBR197C YBR230W-A YBR284W YCK1 YCK2 YCL001W-B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#551 - 560 )
YCL048W-A YCR075W-A YDC1 YDL012C YDL109C YDR018C YDR132C YDR134C YDR514C YDR524C-B
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#561 - 570 )
YEF1 YEF3 YER158C YGR169C-A YHL012W YHL017W YHP1 YHR033W YHR080C YIR016W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#571 - 580 )
YJL070C YJL160C YJL181W YJR005C-A YJR030C YJR061W YJR115W YKR018C YLL017W YLR108C
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#581 - 590 )
YLR177W YLR297W YLR456W YMC1 YMC2 YML018C YMR084W YMR085W YMR181C YMR206W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#591 - 600 )
YMR279C YNL095C YNL108C YNR014W YNR034W-A YNR048W YOL019W YOL024W YOL036W YOR186W
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#601 - 610 )
YOR338W YOR342C YOR365C YOX1 YPC1 YPK1 YPK2 YPL077C YPL229W YPR1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball blue ball

Topics Genes linked to topics (#611 - 620 )
YPR172W YPR174C YPT31 YPT32 YPT53 YRO2 YRR1 YSC84 YSH1 YSP1
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Topics Genes linked to topics (#621 - 626 )
YSP2 YSR3 YUR1 ZDS1 ZDS2 ZRC1
Primary Literature blue ball blue ball blue ball blue ball blue ball blue ball

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